C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027673 Ndufb5 10090 + 3:32736990-32751566 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000029217 Ndufb5-003 32737106-32751246 nonsense_mediated_decay
  ENSMUST00000121778 Ndufb5-002 32737071-32748900 protein_coding
  ENSMUST00000122290 Ndufb5-007 32744756-32751230 protein_coding
  ENSMUST00000127477 Ndufb5-001 32736990-32751566 protein_coding
  ENSMUST00000139593 Ndufb5-006 32741595-32751102 protein_coding
  ENSMUST00000154257 Ndufb5-005 32737127-32749073 protein_coding
  ENSMUST00000156174 Ndufb5-004 32737107-32748471 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121778ENSMUST00000122290ENSMUST00000127477
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121778 93.114±5.31 666.896±93.68 29.483±0.00 N/A 203.531±88.31 227.853±42.10 348.492±85.21 245.217±13.59 145.626±79.41 67.691±16.65 N/A 131.508±58.06 N/A 135.104±18.28
ENSMUST00000122290 22.135±0.00 N/A 48.038±3.60 60.352±35.12 72.000±0.00 N/A 102.382±21.68 57.047±1.01 41.404±7.93 N/A 159.405±17.76 76.634±18.85 64.666±24.49 108.937±0.00
ENSMUST00000127477 19.547±2.88 N/A 25.216±0.91 20.398±6.01 27.290±0.92 26.543±0.60 64.811±9.33 44.510±5.91 24.335±4.74 15.000±3.24 118.039±15.49 18.930±4.97 28.669±11.57 29.243±5.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00049Q CIL_00049Q_0003 CGP 3:32708546-32737147
CIL_00049U CIL_00049U_0003 CGP 3:32725397-32751566
CIL_00049V CIL_00049V_0003 CGP 3:32736990-32938071

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005743 IDA mitochondrial inner membrane
GO:0005747 IEA mitochondrial respiratory chain complex I
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000070824 ndufb5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex 5 protein_coding Danio_rerio
ENSG00000136521 NDUFB5 NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 5, 16kDa protein_coding Homo_sapiens

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