C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: polypeptide N-acetylgalactosaminyltransferase 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136542 GALNT5 9606 + 2:157257598-157314211 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000259056 GALNT5-001 157257598-157314211 protein_coding
  ENST00000461704 GALNT5-003 157301486-157302597 processed_transcript
  ENST00000463418 GALNT5-002 157300803-157302597 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000259056ENST00000461704ENST00000463418
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000259056 0.026±0.00 0.011±0.00 0.023±0.00 0.635±0.54 1.625±1.28 0.050±0.01 0.074±0.00 0.160±0.16 2.868±0.82 1.145±0.93 0.057±0.00 0.069±0.05
ENST00000461704 N/A N/A N/A N/A N/A 0.302±0.00 N/A N/A N/A N/A N/A N/A
ENST00000463418 N/A 0.063±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000756 CIL_000756_0001 CGP 2:156435290-157314211
CIL_0008SE CIL_0008SE_0001 VISTA 2:156704589-157305897
CIL_0008JI CIL_0008JI_0001 VISTA 2:156743280-157344209
CIL_00088Y CIL_00088Y_0001 VISTA 2:156849033-157450009
CIL_000757 CIL_000757_0001 CGP 2:157257598-157327713

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005575 ND cellular_component
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061709 CABZ01069344.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000026828 Galnt5 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5 protein_coding Mus_musculus

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