C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polypeptide N-acetylgalactosaminyltransferase 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000259056 GALNT5-001 ENSG00000136542 9606 + 2:157257598-157314211 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000259056
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000259056 0.026±0.00 0.011±0.00 0.023±0.00 0.635±0.54 1.625±1.28 0.050±0.01 0.074±0.00 0.160±0.16 2.868±0.82 1.145±0.93 0.057±0.00 0.069±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000756 CIL_000756_0001 CGP 2:156435290-157314211
CIL_0008SE CIL_0008SE_0001 VISTA 2:156704589-157305897
CIL_0008JI CIL_0008JI_0001 VISTA 2:156743280-157344209
CIL_00088Y CIL_00088Y_0001 VISTA 2:156849033-157450009
CIL_000757 CIL_000757_0001 CGP 2:157257598-157327713

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0004653 IDA polypeptide N-acetylgalactosaminyltransferase activity
GO:0005575 ND cellular_component
GO:0006024 TAS glycosaminoglycan biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0030246 IEA carbohydrate binding
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166729 Galnt5-201 protein_coding Mus_musculus 0 2412
ENSMUST00000144671 Galnt5-002 processed_transcript Mus_musculus 0 2412
ENSMUST00000112616 Galnt5-001 protein_coding Mus_musculus 0 2412

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