C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 5, group A, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000136931 NR5A1 9606 - 9:124481236-124507430 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000373587 NR5A1-002 124482728-124500986 protein_coding
  ENST00000373588 NR5A1-001 124481237-124507430 protein_coding
  ENST00000455734 NR5A1-003 124500427-124507235 protein_coding
  ENST00000620110 NR5A1-201 124481236-124507420 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastKidneyLiverLungOvaryPlacentaTestisENST00000373587ENST00000373588ENST00000455734ENST00000620110
Transcript ID Adrenal Breast Kidney Liver Lung Ovary Placenta Testis
ENST00000373587 N/A N/A N/A N/A N/A N/A 0.116±0.00 N/A
ENST00000373588 N/A N/A N/A N/A N/A 16.830±13.29 N/A 6.711±1.93
ENST00000455734 0.135±0.00 0.267±0.00 N/A N/A N/A N/A N/A N/A
ENST00000620110 N/A N/A 0.030±0.00 0.053±0.00 0.009±0.00 0.227±0.00 N/A 3.485±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0001 VISTA 9:123985007-124587009
CIL_00098L CIL_00098L_0001 VISTA 9:124060941-124661966
CIL_00075I CIL_00075I_0001 CGP 9:124481236-124771310

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001553 IEA luteinization
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 TAS transcription coactivator activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005543 IDA phospholipid binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007267 TAS cell-cell signaling
GO:0007538 TAS primary sex determination
GO:0008270 IEA zinc ion binding
GO:0008584 IEA male gonad development
GO:0008585 IEA female gonad development
GO:0009888 IEA tissue development
GO:0010259 IEA multicellular organismal aging
GO:0010467 TAS gene expression
GO:0019899 IPI enzyme binding
GO:0022414 IEA reproductive process
GO:0030154 IEA cell differentiation
GO:0030325 IEA adrenal gland development
GO:0030522 TAS intracellular receptor signaling pathway
GO:0042445 IEA hormone metabolic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0050810 TAS regulation of steroid biosynthetic process
GO:0051457 IEA maintenance of protein location in nucleus
GO:2000020 IDA positive regulation of male gonad development
GO:2000195 IEA negative regulation of female gonad development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017704 nr5a1a nuclear receptor subfamily 5, group A, member 1a protein_coding Danio_rerio
ENSDARG00000023362 nr5a1b nuclear receptor subfamily 5, group A, member 1b protein_coding Danio_rerio
ENSMUSG00000026751 Nr5a1 nuclear receptor subfamily 5, group A, member 1 protein_coding Mus_musculus

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