C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nuclear receptor subfamily 5, group A, member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000026751 Nr5a1 10090 - 2:38692656-38714542 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028084 Nr5a1-003 38692660-38714542 protein_coding
  ENSMUST00000112883 Nr5a1-001 38692656-38712234 protein_coding
  ENSMUST00000149690 Nr5a1-002 38701322-38711188 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000028084ENSMUST00000112883ENSMUST00000149690
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000028084 0.013±0.00 448.610±125.40 0.003±0.00 N/A 0.004±0.00 0.013±0.00 0.056±0.00 0.487±0.29 0.008±0.00 0.013±0.01 127.366±42.91 0.037±0.02 9.255±3.25
ENSMUST00000112883 0.010±0.01 N/A 0.003±0.00 0.237±0.22 0.014±0.01 0.015±0.01 0.034±0.03 0.013±0.00 0.005±0.00 0.001±0.00 N/A 0.042±0.03 N/A
ENSMUST00000149690 0.015±0.00 N/A 0.008±0.00 N/A N/A 0.034±0.00 N/A 0.014±0.00 N/A 0.029±0.00 16.750±0.00 0.003±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0002 VISTA 2:38235055-38837083
CIL_00098L CIL_00098L_0002 VISTA 2:38294702-38895720
CIL_00075I CIL_00075I_0002 CGP 2:38692656-38927688

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001553 IMP luteinization
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003690 IEA double-stranded DNA binding
GO:0003705 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005543 IEA phospholipid binding
GO:0005634 IDA nucleus
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0008584 IMP male gonad development
GO:0008585 IEA female gonad development
GO:0009888 IMP tissue development
GO:0010259 IMP multicellular organismal aging
GO:0019899 IEA enzyme binding
GO:0022414 IMP reproductive process
GO:0030154 IGI cell differentiation
GO:0030325 IGI adrenal gland development
GO:0042445 IMP hormone metabolic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0051457 IDA maintenance of protein location in nucleus
GO:2000020 IMP positive regulation of male gonad development
GO:2000195 IMP negative regulation of female gonad development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017704 nr5a1a nuclear receptor subfamily 5, group A, member 1a protein_coding Danio_rerio
ENSDARG00000023362 nr5a1b nuclear receptor subfamily 5, group A, member 1b protein_coding Danio_rerio
ENSG00000136931 NR5A1 nuclear receptor subfamily 5, group A, member 1 protein_coding Homo_sapiens

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