C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 5, group A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373588 NR5A1-001 ENSG00000136931 9606 - 9:124481237-124507430 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryTestisENST00000373588
Transcript ID Ovary Testis
ENST00000373588 16.830±13.29 6.711±1.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0001 VISTA 9:123985007-124587009
CIL_00098L CIL_00098L_0001 VISTA 9:124060941-124661966
CIL_00075I CIL_00075I_0001 CGP 9:124481236-124771310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001553 IEA luteinization
GO:0003677 IDA DNA binding
GO:0003682 IEA chromatin binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003705 IDA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 TAS transcription coactivator activity
GO:0004879 TAS ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0005515 IPI protein binding
GO:0005543 IDA phospholipid binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007267 TAS cell-cell signaling
GO:0007538 TAS primary sex determination
GO:0008270 IEA zinc ion binding
GO:0008584 IEA male gonad development
GO:0008585 IEA female gonad development
GO:0009888 IEA tissue development
GO:0010259 IEA multicellular organismal aging
GO:0010467 TAS gene expression
GO:0019899 IPI enzyme binding
GO:0022414 IEA reproductive process
GO:0030154 IEA cell differentiation
GO:0030325 IEA adrenal gland development
GO:0030522 TAS intracellular receptor signaling pathway
GO:0042445 IEA hormone metabolic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0050810 TAS regulation of steroid biosynthetic process
GO:0051457 IEA maintenance of protein location in nucleus
GO:2000020 IDA positive regulation of male gonad development
GO:2000195 IEA negative regulation of female gonad development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028084 Nr5a1-003 protein_coding Mus_musculus 0 1788
ENSMUST00000112883 Nr5a1-001 protein_coding Mus_musculus 0 1711
ENSMUST00000149690 Nr5a1-002 retained_intron Mus_musculus 0 1225
ENSDART00000062417 nr5a2-201 protein_coding Danio_rerio 0 294
ENSDART00000127424 nr5a2-001 protein_coding Danio_rerio 0 294

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