C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 5, group A, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620110 NR5A1-201 ENSG00000136931 9606 - 9:124481236-124507420 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyLiverLungOvaryTestisENST00000620110
Transcript ID Kidney Liver Lung Ovary Testis
ENST00000620110 0.030±0.00 0.053±0.00 0.009±0.00 0.227±0.00 3.485±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008N3 CIL_0008N3_0001 VISTA 9:123985007-124587009
CIL_00098L CIL_00098L_0001 VISTA 9:124060941-124661966
CIL_00075I CIL_00075I_0001 CGP 9:124481236-124771310

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028084 Nr5a1-003 protein_coding Mus_musculus 0 1133
ENSMUST00000149690 Nr5a1-002 retained_intron Mus_musculus 0 1066
ENSMUST00000112883 Nr5a1-001 protein_coding Mus_musculus 0 1066
ENSDART00000062417 nr5a2-201 protein_coding Danio_rerio 0 294
ENSDART00000127424 nr5a2-001 protein_coding Danio_rerio 0 294

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