C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Yip1 domain family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137207 YIPF3 9606 - 6:43511827-43516990 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000372417 YIPF3-006 43512828-43513721 retained_intron
  ENST00000372422 YIPF3-003 43511827-43516990 protein_coding
  ENST00000416380 YIPF3-004 43512763-43516942 nonsense_mediated_decay
  ENST00000455768 YIPF3-005 43512761-43516919 nonsense_mediated_decay
  ENST00000460547 YIPF3-009 43512466-43516933 nonsense_mediated_decay
  ENST00000460903 YIPF3-002 43515537-43516959 retained_intron
  ENST00000488966 YIPF3-008 43513214-43515647 retained_intron
  ENST00000490447 YIPF3-014 43512159-43516972 nonsense_mediated_decay
  ENST00000500090 YIPF3-017 43513142-43515688 protein_coding
  ENST00000502714 YIPF3-016 43513449-43516391 retained_intron
  ENST00000503147 YIPF3-007 43512220-43513192 retained_intron
  ENST00000503972 YIPF3-020 43512455-43516953 protein_coding
  ENST00000506469 YIPF3-012 43511928-43516941 protein_coding
  ENST00000510102 YIPF3-001 43511840-43516985 nonsense_mediated_decay
  ENST00000511831 YIPF3-018 43513596-43516614 protein_coding
  ENST00000512713 YIPF3-021 43512535-43513231 retained_intron
  ENST00000514627 YIPF3-019 43512458-43513838 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372422ENST00000455768ENST00000460903ENST00000490447ENST00000503972ENST00000506469
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372422 36.474±0.00 27.354±0.00 5.532±0.00 14.669±9.18 16.353±14.77 22.536±21.61 10.638±9.46 33.046±24.27 17.463±13.11 28.333±0.00 17.579±6.74 46.629±25.13 98.228±21.11 38.076±5.78
ENST00000455768 N/A N/A N/A 9.609±6.19 13.474±0.00 3.355±0.00 6.782±0.00 4.106±0.00 4.568±0.00 2.099±0.00 N/A 5.313±0.00 N/A N/A
ENST00000460903 N/A N/A N/A N/A N/A 3.987±0.00 N/A N/A N/A N/A N/A 36.577±0.00 52.905±0.00 33.114±0.00
ENST00000490447 N/A N/A N/A 2.797±0.00 2.289±0.00 4.090±0.00 N/A 3.158±0.00 N/A 3.724±0.00 N/A N/A N/A N/A
ENST00000503972 N/A N/A N/A N/A N/A N/A 0.795±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000506469 N/A 9.601±0.00 2.891±0.00 N/A N/A N/A 4.908±0.00 N/A N/A 9.756±8.76 13.741±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540
CIL_0005N0 CIL_0005N0_0001 CGP 6:43509702-43529585

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030133 IDA transport vesicle
GO:0030154 IEA cell differentiation
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020449 yipf3 Yip1 domain family, member 3 protein_coding Danio_rerio
ENSMUSG00000071074 Yipf3 Yip1 domain family, member 3 protein_coding Mus_musculus

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