C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: Yip1 domain family, member 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000071074 Yipf3 10090 + 17:46248080-46252537 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000095263 Yipf3-001 46248080-46252537 protein_coding
  ENSMUST00000123311 Yipf3-003 46248125-46251488 protein_coding
  ENSMUST00000127378 Yipf3-004 46249029-46251904 protein_coding
  ENSMUST00000145371 Yipf3-005 46250089-46250993 processed_transcript
  ENSMUST00000149989 Yipf3-006 46251341-46252017 processed_transcript
  ENSMUST00000151488 Yipf3-002 46248145-46252001 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095263ENSMUST00000123311ENSMUST00000127378ENSMUST00000149989ENSMUST00000151488
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095263 18.504±5.90 55.151±20.21 20.814±0.95 12.713±6.83 19.636±7.95 49.204±17.62 9.002±2.04 20.446±3.30 14.949±6.09 38.251±10.58 2.891±0.82 35.027±15.67 7.396±0.46 8.434±4.02
ENSMUST00000123311 46.570±0.00 N/A 15.847±0.00 N/A 62.514±0.00 N/A N/A N/A 23.980±4.50 35.398±6.84 6.406±0.07 46.164±7.41 20.659±2.75 18.566±0.00
ENSMUST00000127378 N/A N/A N/A N/A 7.089±0.00 N/A N/A N/A N/A N/A 4.892±0.00 11.920±2.05 16.044±0.92 N/A
ENSMUST00000149989 N/A 92.641±24.21 14.980±0.00 N/A 39.899±0.67 76.380±3.61 19.103±0.00 38.827±9.10 28.167±4.48 N/A 9.072±1.96 60.345±9.80 36.364±3.54 N/A
ENSMUST00000151488 15.809±3.44 N/A 17.139±1.86 12.227±4.08 13.782±3.56 N/A 5.989±0.43 N/A 6.351±1.24 11.776±1.33 5.825±1.83 17.522±3.71 20.701±11.14 8.532±1.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0002 VISTA 17:45708824-46310190
CIL_0005N0 CIL_0005N0_0002 CGP 17:46243920-46252537
CIL_0002NT CIL_0002NT_0002 CGP 17:46248080-46257316

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0030133 IEA transport vesicle
GO:0030154 IEA cell differentiation
GO:0043231 IEA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020449 yipf3 Yip1 domain family, member 3 protein_coding Danio_rerio
ENSG00000137207 YIPF3 Yip1 domain family, member 3 protein_coding Homo_sapiens

Loading