C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Yip1 domain family, member 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000372422 YIPF3-003 ENSG00000137207 9606 - 6:43511827-43516990 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000372422
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000372422 36.474±0.00 27.354±0.00 5.532±0.00 14.669±9.18 16.353±14.77 22.536±21.61 10.638±9.46 33.046±24.27 17.463±13.11 28.333±0.00 17.579±6.74 46.629±25.13 98.228±21.11 38.076±5.78

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YI CIL_0008YI_0001 VISTA 6:43493027-44094540
CIL_0005N0 CIL_0005N0_0001 CGP 6:43509702-43529585

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005794 IDA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0016021 IEA integral component of membrane
GO:0030133 IDA transport vesicle
GO:0030154 IEA cell differentiation
GO:0043231 IDA intracellular membrane-bounded organelle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000095263 Yipf3-001 protein_coding Mus_musculus 0 1423
ENSMUST00000151488 Yipf3-002 retained_intron Mus_musculus 0 1024
ENSMUST00000127378 Yipf3-004 protein_coding Mus_musculus 0 684
ENSMUST00000123311 Yipf3-003 protein_coding Mus_musculus 0 673
ENSMUST00000145371 Yipf3-005 processed_transcript Mus_musculus 3.9937e-43 180

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