C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trimethylguanosine synthase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137574 TGS1 9606 + 8:55773142-55825448 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260129 TGS1-001 55773142-55825446 protein_coding
  ENST00000519494 TGS1-003 55790097-55798998 retained_intron
  ENST00000523948 TGS1-002 55773470-55825448 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260129ENST00000523948
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260129 1.908±0.00 4.620±0.00 3.142±0.00 1.731±0.71 2.547±0.22 2.195±0.73 1.290±0.45 2.537±1.44 2.712±1.86 2.088±0.52 0.844±0.00 5.352±2.99 4.328±2.80 8.338±1.94
ENST00000523948 N/A N/A N/A N/A N/A 1.189±0.00 N/A 0.671±0.00 N/A N/A N/A N/A 1.032±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QG CIL_0003QG_0001 CGP 8:55696424-55825448
CIL_00009D CIL_00009D_0001 CGP 8:55773142-56011381

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000387 TAS spliceosomal snRNP assembly
GO:0001510 IEA RNA methylation
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008168 IEA methyltransferase activity
GO:0009452 IEA 7-methylguanosine RNA capping
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0022613 IC ribonucleoprotein complex biogenesis
GO:0030532 IC small nuclear ribonucleoprotein complex
GO:0034660 TAS ncRNA metabolic process
GO:0036261 IDA 7-methylguanosine cap hypermethylation
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0071164 IDA RNA trimethylguanosine synthase activity
GO:0071167 IC ribonucleoprotein complex import into nucleus

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000067916 tgs1 trimethylguanosine synthase homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000028233 Tgs1 trimethylguanosine synthase homolog (S. cerevisiae) protein_coding Mus_musculus
ENSMUSG00000093862 Gm5117 predicted gene 5117 protein_coding Mus_musculus

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