C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trimethylguanosine synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260129 TGS1-001 ENSG00000137574 9606 + 8:55773142-55825446 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260129
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260129 1.908±0.00 4.620±0.00 3.142±0.00 1.731±0.71 2.547±0.22 2.195±0.73 1.290±0.45 2.537±1.44 2.712±1.86 2.088±0.52 0.844±0.00 5.352±2.99 4.328±2.80 8.338±1.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QG CIL_0003QG_0001 CGP 8:55696424-55825448
CIL_00009D CIL_00009D_0001 CGP 8:55773142-56011381

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000387 TAS spliceosomal snRNP assembly
GO:0001510 IEA RNA methylation
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008168 IEA methyltransferase activity
GO:0009452 IEA 7-methylguanosine RNA capping
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0022613 IC ribonucleoprotein complex biogenesis
GO:0030532 IC small nuclear ribonucleoprotein complex
GO:0034660 TAS ncRNA metabolic process
GO:0036261 IDA 7-methylguanosine cap hypermethylation
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0071164 IDA RNA trimethylguanosine synthase activity
GO:0071167 IC ribonucleoprotein complex import into nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052712 Tgs1-001 protein_coding Mus_musculus 0 2061
ENSMUST00000178878 Gm5117-201 protein_coding Mus_musculus 0 1709
ENSMUST00000130514 Tgs1-004 retained_intron Mus_musculus 0 320
ENSMUST00000146315 Tgs1-005 retained_intron Mus_musculus 0 276
ENSMUST00000132518 Tgs1-002 retained_intron Mus_musculus 3e-38 165

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