C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00009D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137574-ENSG00000254087 CGP 9606 8:55773142-56011381
GeneTranscriptPositionBiotype
ENSG00000137574 (TGS1)
trimethylguanosine synthase 1 		ENST00000260129 (TGS1-001) 55773142-55825446 protein_coding
ENST00000519494 (TGS1-003) 55790097-55798998 retained_intron
ENST00000523948 (TGS1-002) 55773470-55825448 nonsense_mediated_decay
ENSG00000199405 (SNORA1)
Small nucleolar RNA SNORA1 		ENST00000362535 (SNORA1.1-201) 55902723-55902855 snoRNA
ENSG00000216204 (AC018607.1)
 ENST00000401385 (AC018607.1-201) 55908961-55909052 miRNA
ENSG00000240905 (RN7SL798P)
RNA, 7SL, cytoplasmic 798, pseudogene 		ENST00000468562 (RN7SL798P-201) 55980240-55980540 misc_RNA
ENSG00000254325 (RP11-318K15.2)
 ENST00000518552 (RP11-318K15.2-001) 55893595-55895739 sense_intronic
CIL_00009D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028233-ENSMUSG00000042228 CGP 10090 4:3574875-3813122
GeneTranscriptPositionBiotype
ENSMUSG00000028233 (Tgs1)
trimethylguanosine synthase homolog (S. cerevisiae) 		ENSMUST00000052712 (Tgs1-001) 3574875-3616619 protein_coding
ENSMUST00000129964 (Tgs1-003) 3593586-3598606 processed_transcript
ENSMUST00000130514 (Tgs1-004) 3598554-3602551 retained_intron
ENSMUST00000132518 (Tgs1-002) 3574950-3583931 retained_intron
ENSMUST00000146315 (Tgs1-005) 3605637-3615283 retained_intron
ENSMUSG00000042228 (Lyn)
Yamaguchi sarcoma viral (v-yes-1) oncogene homolog 		ENSMUST00000041377 (Lyn-001) 3678115-3791613 protein_coding
ENSMUST00000103010 (Lyn-002) 3678127-3791612 protein_coding
ENSMUST00000137943 (Lyn-004) 3756457-3813122 processed_transcript
ENSMUST00000145083 (Lyn-003) 3678130-3739176 processed_transcript
ENSMUSG00000055216 (9430025C20Rik)
RIKEN cDNA 9430025C20 gene 		ENSMUST00000068663 (9430025C20Rik-201) 3806635-3808751 pseudogene
ENSMUSG00000077271 (Gm22781)
predicted gene, 22781 		ENSMUST00000104083 (Gm22781-201) 3796447-3796583 snoRNA
ENSMUSG00000083186 (Gm11805)
predicted gene 11805 		ENSMUST00000121238 (Gm11805-001) 3720427-3721026 processed_pseudogene
ENSMUSG00000085394 (2210414B05Rik)
RIKEN cDNA 2210414B05 gene 		ENSMUST00000139600 (2210414B05Rik-001) 3656508-3663108 lincRNA
ENSMUSG00000097860 (Gm26857)
predicted gene, 26857 		ENSMUST00000181580 (Gm26857-201) 3678117-3689548 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009D_0001ENSG00000137574ENST00000260129ENST00000519494ENST00000523948ENSG00000199405ENST00000362535ENSG00000216204ENST00000401385ENSG00000240905ENST00000468562ENSG00000254325ENST00000518552CIL_00009D_0002ENSMUSG00000028233ENSMUST00000052712ENSMUST00000129964ENSMUST00000130514ENSMUST00000132518ENSMUST00000146315ENSMUSG00000042228ENSMUST00000041377ENSMUST00000103010ENSMUST00000137943ENSMUST00000145083ENSMUSG00000055216ENSMUST00000068663ENSMUSG00000077271ENSMUST00000104083ENSMUSG00000083186ENSMUST00000121238ENSMUSG00000085394ENSMUST00000139600ENSMUSG00000097860ENSMUST00000181580
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00009D_0001ENSG00000137574ENST00000260129ENST00000523948ENSG00000199405ENST00000362535ENSG00000216204ENST00000401385ENSG00000240905ENST00000468562ENSG00000254325ENST00000518552CIL_00009D_0002ENSMUSG00000028233ENSMUST00000052712ENSMUST00000146315ENSMUSG00000042228ENSMUST00000041377ENSMUST00000103010ENSMUST00000137943ENSMUSG00000055216ENSMUST00000068663ENSMUSG00000077271ENSMUST00000104083ENSMUSG00000083186ENSMUST00000121238ENSMUSG00000085394ENSMUST00000139600ENSMUSG00000097860ENSMUST00000181580
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137574 ENST00000260129 1.908±0.00 4.620±0.00 3.142±0.00 1.731±0.71 2.547±0.22 2.195±0.73 1.290±0.45 2.537±1.44 2.712±1.86 2.088±0.52 0.844±0.00 5.352±2.99 4.328±2.80 8.338±1.94
ENST00000519494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523948 N/A N/A N/A N/A N/A 1.189±0.00 N/A 0.671±0.00 N/A N/A N/A N/A 1.032±0.00 N/A
ENSG00000199405 ENST00000362535 N/A 0.333±0.00 N/A 0.333±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000216204 ENST00000401385 0.186±0.00 N/A N/A N/A N/A 0.147±0.00 N/A N/A 0.154±0.00 N/A N/A N/A N/A N/A
ENSG00000240905 ENST00000468562 N/A N/A N/A 0.243±0.00 0.076±0.00 0.068±0.00 N/A 0.148±0.00 N/A 0.214±0.00 N/A N/A N/A 0.133±0.00
ENSG00000254325 ENST00000518552 N/A 0.199±0.00 N/A 0.034±0.00 0.094±0.00 0.498±0.00 0.474±0.00 0.476±0.46 0.217±0.00 0.618±0.00 N/A 0.077±0.02 0.062±0.00 N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028233 ENSMUST00000052712 2.005±0.60 1.203±0.33 3.830±0.45 9.415±4.90 1.595±0.46 1.023±0.44 0.949±0.20 1.034±0.28 3.975±3.18 2.306±0.76 1.680±0.17 2.432±1.98 6.930±3.15 0.735±0.11
ENSMUST00000129964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000146315 N/A N/A N/A 13.042±0.00 N/A N/A N/A N/A N/A N/A N/A 19.842±0.00 21.769±8.71 2.681±0.00
ENSMUSG00000042228 ENSMUST00000041377 3.595±0.36 N/A 3.102±0.77 0.925±0.67 4.964±2.77 3.558±0.00 1.647±0.55 1.819±0.48 4.544±2.89 7.989±0.58 0.880±0.27 3.676±1.28 3.837±1.69 0.244±0.01
ENSMUST00000103010 4.868±0.65 5.322±0.82 1.805±0.12 0.546±0.27 6.977±2.37 4.896±0.54 2.107±0.29 3.417±0.67 3.312±1.15 13.060±2.19 0.434±0.24 3.266±1.32 1.893±0.47 0.170±0.10
ENSMUST00000137943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.984±0.19 N/A N/A
ENSMUST00000145083 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055216 ENSMUST00000068663 0.206±0.08 0.181±0.10 0.206±0.04 0.462±0.26 0.127±0.02 0.113±0.06 0.078±0.03 0.051±0.02 0.077±0.04 0.235±0.07 0.047±0.01 0.275±0.11 0.124±0.06 0.062±0.05
ENSMUSG00000077271 ENSMUST00000104083 792.615±84.68 N/A N/A 4.905±0.00 N/A 1836.000±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000083186 ENSMUST00000121238 0.194±0.07 0.357±0.00 0.048±0.00 0.176±0.00 0.674±0.35 0.406±0.13 N/A N/A 0.301±0.16 0.371±0.13 0.059±0.00 0.075±0.00 0.077±0.00 0.096±0.00
ENSMUSG00000085394 ENSMUST00000139600 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 0.062±0.00 0.039±0.00 0.051±0.02 N/A N/A
ENSMUSG00000097860 ENSMUST00000181580 3.193±0.79 16.651±1.97 N/A 0.288±0.00 17.914±10.95 9.598±0.92 1.490±0.65 2.779±1.01 2.858±0.35 22.665±8.50 N/A 7.897±3.23 N/A 0.110±0.09

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