C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: radixin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137710 RDX 9606 - 11:110174880-110296722 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000343115 RDX-001 110229450-110296722 protein_coding
  ENST00000405097 RDX-002 110195561-110296712 protein_coding
  ENST00000527537 RDX-009 110229447-110236671 retained_intron
  ENST00000528498 RDX-006 110174880-110296712 protein_coding
  ENST00000528556 RDX-013 110263960-110296597 nonsense_mediated_decay
  ENST00000528900 RDX-003 110195561-110296712 protein_coding
  ENST00000529774 RDX-015 110253945-110258208 retained_intron
  ENST00000530085 RDX-016 110231838-110237886 protein_coding
  ENST00000530131 RDX-007 110231551-110296614 nonsense_mediated_decay
  ENST00000530301 RDX-004 110195561-110296712 protein_coding
  ENST00000530749 RDX-005 110174880-110296712 nonsense_mediated_decay
  ENST00000532118 RDX-014 110258179-110288391 protein_coding
  ENST00000532461 RDX-008 110229450-110237857 retained_intron
  ENST00000533678 RDX-011 110264779-110296618 nonsense_mediated_decay
  ENST00000533961 RDX-017 110231550-110233523 retained_intron
  ENST00000533991 RDX-010 110264045-110296640 protein_coding
  ENST00000534683 RDX-012 110255306-110296612 protein_coding
  ENST00000544551 RDX-201 110229443-110296712 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343115ENST00000405097ENST00000532461ENST00000544551
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343115 10.703±0.00 3.463±0.00 2.784±0.00 4.383±2.95 4.806±0.00 5.658±2.53 8.545±3.03 7.236±3.47 5.763±1.87 6.545±0.53 8.302±7.01 6.411±1.52 3.769±1.23 10.126±0.30
ENST00000405097 N/A N/A N/A 1.595±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000532461 N/A 4.185±0.00 N/A N/A N/A 1.220±0.00 N/A N/A N/A N/A 2.248±0.00 7.870±4.64 N/A N/A
ENST00000544551 7.789±0.00 2.282±0.00 N/A N/A 1.986±0.28 N/A 2.846±0.00 3.221±0.00 1.431±0.00 3.944±0.00 N/A N/A N/A 4.677±1.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DH CIL_0008DH_0001 VISTA 11:109830170-110432509

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001726 IEA ruffle
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005902 IEA microvillus
GO:0005925 IDA focal adhesion
GO:0007010 IEA cytoskeleton organization
GO:0008092 IEA cytoskeletal protein binding
GO:0010628 IGI positive regulation of gene expression
GO:0019898 IEA extrinsic component of membrane
GO:0030027 IEA lamellipodium
GO:0030033 IEA microvillus assembly
GO:0030175 IEA filopodium
GO:0030315 IEA T-tubule
GO:0032420 IEA stereocilium
GO:0044822 IDA poly(A) RNA binding
GO:0045176 IEA apical protein localization
GO:0045177 IEA apical part of cell
GO:0051286 IEA cell tip
GO:0051693 IEA actin filament capping
GO:0061028 IGI establishment of endothelial barrier
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000032050 Rdx radixin protein_coding Mus_musculus

Loading