C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: radixin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000343115 RDX-001 ENSG00000137710 9606 - 11:110229450-110296722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000343115
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000343115 10.703±0.00 3.463±0.00 2.784±0.00 4.383±2.95 4.806±0.00 5.658±2.53 8.545±3.03 7.236±3.47 5.763±1.87 6.545±0.53 8.302±7.01 6.411±1.52 3.769±1.23 10.126±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008DH CIL_0008DH_0001 VISTA 11:109830170-110432509

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005615 IDA extracellular space
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0005925 IDA focal adhesion
GO:0007010 IEA cytoskeleton organization
GO:0008092 IEA cytoskeletal protein binding
GO:0010628 IGI positive regulation of gene expression
GO:0019898 IEA extrinsic component of membrane
GO:0044822 IDA poly(A) RNA binding
GO:0051693 IEA actin filament capping
GO:0061028 IGI establishment of endothelial barrier
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000590 Rdx-201 protein_coding Mus_musculus 0 2639
ENSMUST00000163153 Rdx-203 protein_coding Mus_musculus 0 2560
ENSMUST00000061352 Rdx-202 protein_coding Mus_musculus 0 1685

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