C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulator of microtubule dynamics 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137824 RMDN3 9606 - 15:40735884-40755851 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260385 RMDN3-001 40735884-40755851 protein_coding
  ENST00000338376 RMDN3-003 40735888-40755260 protein_coding
  ENST00000557831 RMDN3-006 40736338-40737820 retained_intron
  ENST00000558232 RMDN3-012 40736427-40745211 protein_coding
  ENST00000558364 RMDN3-009 40740150-40747782 processed_transcript
  ENST00000558560 RMDN3-010 40737678-40752178 processed_transcript
  ENST00000558777 RMDN3-004 40735888-40755246 nonsense_mediated_decay
  ENST00000560460 RMDN3-008 40738510-40755253 protein_coding
  ENST00000560588 RMDN3-005 40735885-40739680 retained_intron
  ENST00000560779 RMDN3-011 40737629-40744305 retained_intron
  ENST00000560905 RMDN3-007 40744094-40755336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260385ENST00000338376ENST00000557831ENST00000558232ENST00000558364ENST00000558777ENST00000560588ENST00000560905
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A
ENST00000338376 15.397±0.00 7.563±0.00 N/A 8.542±7.41 11.653±10.64 5.737±5.35 5.139±0.00 7.097±6.43 8.251±6.50 10.691±8.69 7.353±0.00 9.489±7.08 13.514±7.37 9.903±5.47
ENST00000557831 N/A N/A N/A N/A N/A 1.541±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558232 N/A N/A N/A N/A N/A N/A N/A 0.834±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558364 N/A N/A 1.658±0.00 N/A 0.929±0.00 N/A N/A N/A N/A N/A N/A 7.627±4.86 11.166±0.00 16.920±0.00
ENST00000558777 N/A 4.697±0.00 0.484±0.00 8.276±0.00 N/A N/A N/A 2.859±1.15 1.994±0.00 N/A 0.074±0.00 N/A 3.680±0.00 N/A
ENST00000560588 N/A 1.636±0.00 N/A 0.769±0.00 0.272±0.00 0.585±0.00 N/A N/A N/A 1.163±0.00 N/A N/A N/A N/A
ENST00000560905 N/A N/A N/A 1.377±0.00 0.881±0.00 0.982±0.00 0.349±0.00 N/A N/A N/A N/A 8.663±0.00 12.859±0.00 12.746±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IO CIL_0005IO_0002 CGP 15:40694774-40755851
CIL_00070C CIL_00070C_0001 CGP 15:40735884-40767710

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 IDA mitochondrial outer membrane
GO:0005874 IEA microtubule
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006915 IEA apoptotic process
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041407 rmdn3 regulator of microtubule dynamics 3 protein_coding Danio_rerio
ENSMUSG00000070730 Rmdn3 regulator of microtubule dynamics 3 protein_coding Mus_musculus

Loading