C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulator of microtubule dynamics 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000338376 RMDN3-003 ENSG00000137824 9606 - 15:40735888-40755260 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000338376
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000338376 15.397±0.00 7.563±0.00 8.542±7.41 11.653±10.64 5.737±5.35 5.139±0.00 7.097±6.43 8.251±6.50 10.691±8.69 7.353±0.00 9.489±7.08 13.514±7.37 9.903±5.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IO CIL_0005IO_0002 CGP 15:40694774-40755851
CIL_00070C CIL_00070C_0001 CGP 15:40735884-40767710

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 IDA mitochondrial outer membrane
GO:0005874 IEA microtubule
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006915 IEA apoptotic process
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094695 Rmdn3-001 protein_coding Mus_musculus 0 1421
ENSMUST00000127965 Rmdn3-007 retained_intron Mus_musculus 0 337
ENSMUST00000156332 Rmdn3-006 retained_intron Mus_musculus 0 309
ENSMUST00000135419 Rmdn3-004 protein_coding Mus_musculus 0 259
ENSMUST00000129351 Rmdn3-003 protein_coding Mus_musculus 0 243
ENSMUST00000139519 Rmdn3-002 protein_coding Mus_musculus 0 239

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