C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005IO_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041411-ENSDARG00000041407 CGP 7955 20:46678960-46718277
GeneTranscriptPositionBiotype
ENSDARG00000041402 (zc3h14)
zinc finger CCCH-type containing 14 		ENSDART00000060695 (zc3h14-001) 46743172-46774074 protein_coding
ENSDART00000152868 (zc3h14-005) 46759542-46764855 processed_transcript
ENSDART00000152977 (zc3h14-004) 46764648-46774025 protein_coding
ENSDART00000153024 (zc3h14-003) 46708041-46745687 processed_transcript
ENSDART00000153346 (zc3h14-002) 46693577-46745781 processed_transcript
ENSDART00000153447 (zc3h14-006) 46759590-46768196 retained_intron
ENSDARG00000041407 (rmdn3)
regulator of microtubule dynamics 3 		ENSDART00000060702 (rmdn3-001) 46693279-46718277 protein_coding
ENSDART00000153324 (rmdn3-002) 46701475-46708253 nonsense_mediated_decay
ENSDARG00000041411 (rad51)
RAD51 homolog (RecA homolog, E. coli) (S. cerevisiae) 		ENSDART00000060706 (rad51-001) 46678981-46693134 protein_coding
ENSDART00000113264 (rad51-003) 46685301-46692676 protein_coding
ENSDART00000143858 (rad51-002) 46679062-46681793 protein_coding
ENSDART00000153290 (rad51-004) 46678960-46681957 retained_intron

Danio rerio Ensembl (Zv9)

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CIL_0005IO_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000051180-ENSG00000137824 CGP 9606 15:40694774-40755851
GeneTranscriptPositionBiotype
ENSG00000051180 (RAD51)
RAD51 recombinase 		ENST00000267868 (RAD51-001) 40695160-40732339 protein_coding
ENST00000382643 (RAD51-009) 40695174-40731593 protein_coding
ENST00000423169 (RAD51-002) 40695129-40731592 protein_coding
ENST00000525066 (RAD51-004) 40695187-40731557 nonsense_mediated_decay
ENST00000526763 (RAD51-006) 40695463-40701201 protein_coding
ENST00000527860 (RAD51-007) 40694774-40718886 protein_coding
ENST00000531277 (RAD51-010) 40698757-40729634 nonsense_mediated_decay
ENST00000532743 (RAD51-008) 40695174-40731416 protein_coding
ENST00000533741 (RAD51-013) 40701131-40718827 nonsense_mediated_decay
ENST00000557850 (RAD51-003) 40695172-40731590 protein_coding
ENSG00000137824 (RMDN3)
regulator of microtubule dynamics 3 		ENST00000260385 (RMDN3-001) 40735884-40755851 protein_coding
ENST00000338376 (RMDN3-003) 40735888-40755260 protein_coding
ENST00000557831 (RMDN3-006) 40736338-40737820 retained_intron
ENST00000558232 (RMDN3-012) 40736427-40745211 protein_coding
ENST00000558364 (RMDN3-009) 40740150-40747782 processed_transcript
ENST00000558560 (RMDN3-010) 40737678-40752178 processed_transcript
ENST00000558777 (RMDN3-004) 40735888-40755246 nonsense_mediated_decay
ENST00000560460 (RMDN3-008) 40738510-40755253 protein_coding
ENST00000560588 (RMDN3-005) 40735885-40739680 retained_intron
ENST00000560779 (RMDN3-011) 40737629-40744305 retained_intron
ENST00000560905 (RMDN3-007) 40744094-40755336 protein_coding
ENSG00000245849 (RAD51-AS1)
RAD51 antisense RNA 1 (head to head) 		ENST00000499988 (RAD51-AS1-001) 40693741-40695107 retained_intron
ENST00000526635 (RAD51-AS1-003) 40687723-40695098 antisense
ENST00000533146 (RAD51-AS1-004) 40686724-40695096 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005IO_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027323-ENSMUSG00000070730 CGP 10090 2:119112793-119157034
GeneTranscriptPositionBiotype
ENSMUSG00000027323 (Rad51)
RAD51 homolog 		ENSMUST00000028795 (Rad51-001) 119112807-119137290 protein_coding
ENSMUST00000110828 (Rad51-004) 119112814-119133599 retained_intron
ENSMUST00000140939 (Rad51-005) 119112793-119123846 protein_coding
ENSMUST00000141389 (Rad51-006) 119118696-119122262 retained_intron
ENSMUST00000143934 (Rad51-002) 119134162-119135208 retained_intron
ENSMUST00000151406 (Rad51-008) 119123803-119147445 protein_coding
ENSMUST00000152327 (Rad51-003) 119112817-119137037 nonsense_mediated_decay
ENSMUST00000154683 (Rad51-007) 119131518-119134455 retained_intron
ENSMUSG00000070730 (Rmdn3)
regulator of microtubule dynamics 3 		ENSMUST00000094695 (Rmdn3-001) 119137001-119157034 protein_coding
ENSMUST00000127965 (Rmdn3-007) 119139056-119140875 retained_intron
ENSMUST00000129351 (Rmdn3-003) 119154054-119156948 protein_coding
ENSMUST00000130249 (Rmdn3-005) 119146155-119147445 retained_intron
ENSMUST00000135419 (Rmdn3-004) 119154024-119156824 protein_coding
ENSMUST00000139519 (Rmdn3-002) 119154064-119156964 protein_coding
ENSMUST00000156332 (Rmdn3-006) 119142418-119147436 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IO_0001ENSDARG00000041402ENSDART00000060695ENSDART00000152868ENSDART00000152977ENSDART00000153024ENSDART00000153346ENSDART00000153447ENSDARG00000041407ENSDART00000060702ENSDART00000153324ENSDARG00000041411ENSDART00000060706ENSDART00000113264ENSDART00000143858ENSDART00000153290CIL_0005IO_0002ENSG00000051180ENST00000267868ENST00000382643ENST00000423169ENST00000525066ENST00000526763ENST00000527860ENST00000531277ENST00000532743ENST00000533741ENST00000557850ENSG00000137824ENST00000260385ENST00000338376ENST00000557831ENST00000558232ENST00000558364ENST00000558560ENST00000558777ENST00000560460ENST00000560588ENST00000560779ENST00000560905ENSG00000245849ENST00000499988ENST00000526635ENST00000533146CIL_0005IO_0003ENSMUSG00000027323ENSMUST00000028795ENSMUST00000110828ENSMUST00000140939ENSMUST00000141389ENSMUST00000143934ENSMUST00000151406ENSMUST00000152327ENSMUST00000154683ENSMUSG00000070730ENSMUST00000094695ENSMUST00000127965ENSMUST00000129351ENSMUST00000130249ENSMUST00000135419ENSMUST00000139519ENSMUST00000156332
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IO_0001ENSDARG00000041402ENSDART00000060695ENSDARG00000041407ENSDART00000060702ENSDARG00000041411ENSDART00000060706ENSDART00000113264ENSDART00000153290CIL_0005IO_0002ENSG00000051180ENST00000267868ENST00000382643ENST00000423169ENST00000525066ENST00000527860ENST00000531277ENST00000532743ENST00000533741ENST00000557850ENSG00000137824ENST00000260385ENST00000338376ENST00000557831ENST00000558232ENST00000558364ENST00000558777ENST00000560588ENST00000560905ENSG00000245849ENST00000499988ENST00000526635ENST00000533146CIL_0005IO_0003ENSMUSG00000027323ENSMUST00000028795ENSMUST00000151406ENSMUST00000152327ENSMUSG00000070730ENSMUST00000094695ENSMUST00000127965ENSMUST00000129351ENSMUST00000135419ENSMUST00000139519
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000041402 ENSDART00000060695 N/A N/A N/A 8.991±1.29 N/A N/A 8.165±3.88 9.422±0.00 1.025±0.00 N/A 4.455±0.00 N/A N/A N/A
ENSDART00000152868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000152977 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153024 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153346 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000041407 ENSDART00000060702 N/A N/A N/A 19.681±4.36 N/A N/A 5.305±1.78 5.085±0.00 1.763±0.00 N/A 2.248±0.00 N/A N/A N/A
ENSDART00000153324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000041411 ENSDART00000060706 N/A N/A N/A 3.845±0.00 N/A N/A 1.751±0.86 4.544±2.23 0.154±0.00 N/A 1.258±0.00 N/A N/A N/A
ENSDART00000113264 N/A N/A N/A N/A N/A N/A 1.750±0.41 N/A 0.210±0.00 N/A 1.068±0.00 N/A N/A N/A
ENSDART00000143858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000153290 N/A N/A N/A N/A N/A N/A N/A N/A 0.133±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000051180 ENST00000267868 N/A N/A N/A N/A 0.460±0.00 0.300±0.00 N/A N/A N/A N/A N/A N/A 1.438±0.64 N/A
ENST00000382643 N/A N/A N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A N/A N/A N/A N/A
ENST00000423169 N/A N/A N/A N/A N/A 0.595±0.00 N/A N/A N/A N/A 0.304±0.00 N/A 2.279±0.83 7.723±0.99
ENST00000525066 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.784±0.00 2.904±0.06 N/A
ENST00000526763 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.127±0.00 N/A
ENST00000531277 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.962±0.00 N/A N/A N/A
ENST00000532743 0.332±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.182±0.00 1.628±0.00 N/A
ENST00000533741 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.421±0.00 N/A N/A N/A
ENST00000557850 N/A N/A N/A 0.138±0.00 N/A N/A N/A 0.247±0.00 N/A 0.348±0.00 N/A 2.352±0.00 2.261±0.53 5.139±0.89
ENSG00000137824 ENST00000260385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A
ENST00000338376 15.397±0.00 7.563±0.00 N/A 8.542±7.41 11.653±10.64 5.737±5.35 5.139±0.00 7.097±6.43 8.251±6.50 10.691±8.69 7.353±0.00 9.489±7.08 13.514±7.37 9.903±5.47
ENST00000557831 N/A N/A N/A N/A N/A 1.541±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558232 N/A N/A N/A N/A N/A N/A N/A 0.834±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558364 N/A N/A 1.658±0.00 N/A 0.929±0.00 N/A N/A N/A N/A N/A N/A 7.627±4.86 11.166±0.00 16.920±0.00
ENST00000558560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558777 N/A 4.697±0.00 0.484±0.00 8.276±0.00 N/A N/A N/A 2.859±1.15 1.994±0.00 N/A 0.074±0.00 N/A 3.680±0.00 N/A
ENST00000560460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560588 N/A 1.636±0.00 N/A 0.769±0.00 0.272±0.00 0.585±0.00 N/A N/A N/A 1.163±0.00 N/A N/A N/A N/A
ENST00000560779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560905 N/A N/A N/A 1.377±0.00 0.881±0.00 0.982±0.00 0.349±0.00 N/A N/A N/A N/A 8.663±0.00 12.859±0.00 12.746±0.00
ENSG00000245849 ENST00000499988 0.564±0.00 3.840±0.00 1.503±0.00 1.243±0.50 2.737±0.00 1.253±0.40 0.738±0.28 1.473±0.96 1.613±1.28 1.166±0.05 0.254±0.00 2.031±0.87 N/A 5.345±0.00
ENST00000526635 1.507±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533146 0.898±0.00 4.377±0.00 N/A 2.564±0.00 2.322±0.00 1.879±0.00 1.169±0.00 0.204±0.00 2.148±0.00 2.776±0.00 0.918±0.12 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027323 ENSMUST00000028795 N/A N/A N/A 2.213±0.36 N/A N/A N/A N/A 8.592±4.04 N/A 0.290±0.06 1.362±0.00 10.815±0.00 1.561±0.06
ENSMUST00000110828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.967±1.20 N/A 5.365±1.11
ENSMUST00000152327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.330±0.01 1.557±0.33 7.553±2.15 1.191±0.00
ENSMUST00000154683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000070730 ENSMUST00000094695 18.906±3.35 15.286±7.38 12.542±1.17 11.502±3.28 13.610±4.40 13.063±5.06 4.989±0.65 15.417±0.44 19.945±4.06 10.715±0.54 1.563±0.47 6.305±2.95 34.023±10.64 5.293±1.19
ENSMUST00000127965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.955±0.00 N/A N/A N/A
ENSMUST00000129351 N/A 56.133±27.40 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135419 N/A 19.281±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139519 N/A 5.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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