C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: regulator of microtubule dynamics 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000070730 Rmdn3 10090 - 2:119137001-119157034 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000094695 Rmdn3-001 119137001-119157034 protein_coding
  ENSMUST00000127965 Rmdn3-007 119139056-119140875 retained_intron
  ENSMUST00000129351 Rmdn3-003 119154054-119156948 protein_coding
  ENSMUST00000130249 Rmdn3-005 119146155-119147445 retained_intron
  ENSMUST00000135419 Rmdn3-004 119154024-119156824 protein_coding
  ENSMUST00000139519 Rmdn3-002 119154064-119156964 protein_coding
  ENSMUST00000156332 Rmdn3-006 119142418-119147436 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000094695ENSMUST00000127965ENSMUST00000129351ENSMUST00000135419ENSMUST00000139519
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000094695 18.906±3.35 15.286±7.38 12.542±1.17 11.502±3.28 13.610±4.40 13.063±5.06 4.989±0.65 15.417±0.44 19.945±4.06 10.715±0.54 1.563±0.47 6.305±2.95 34.023±10.64 5.293±1.19
ENSMUST00000127965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.955±0.00 N/A N/A N/A
ENSMUST00000129351 N/A 56.133±27.40 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135419 N/A 19.281±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139519 N/A 5.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005IO CIL_0005IO_0003 CGP 2:119112793-119157034
CIL_00070C CIL_00070C_0002 CGP 2:119137001-119172390

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005739 IDA mitochondrion
GO:0005741 ISS mitochondrial outer membrane
GO:0005874 IEA microtubule
GO:0006874 ISS cellular calcium ion homeostasis
GO:0006915 IEA apoptotic process
GO:0016021 IEA integral component of membrane
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041407 rmdn3 regulator of microtubule dynamics 3 protein_coding Danio_rerio
ENSG00000137824 RMDN3 regulator of microtubule dynamics 3 protein_coding Homo_sapiens

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