C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00070C_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137824-ENSG00000137880 CGP 9606 15:40735884-40767710
GeneTranscriptPositionBiotype
ENSG00000104129 (DNAJC17)
DnaJ (Hsp40) homolog, subfamily C, member 17 		ENST00000220496 (DNAJC17-001) 40765155-40807477 protein_coding
ENST00000558727 (DNAJC17-010) 40767913-40770289 processed_transcript
ENST00000558769 (DNAJC17-008) 40775577-40776886 retained_intron
ENST00000559238 (DNAJC17-005) 40767878-40807473 nonsense_mediated_decay
ENST00000559310 (DNAJC17-006) 40774365-40807457 nonsense_mediated_decay
ENST00000560065 (DNAJC17-011) 40774253-40807452 nonsense_mediated_decay
ENST00000560301 (DNAJC17-002) 40775258-40807477 retained_intron
ENST00000560645 (DNAJC17-004) 40773782-40807473 nonsense_mediated_decay
ENST00000561018 (DNAJC17-003) 40774356-40807473 nonsense_mediated_decay
ENST00000561044 (DNAJC17-007) 40779554-40780567 processed_transcript
ENST00000561110 (DNAJC17-009) 40767873-40775621 retained_intron
ENSG00000137824 (RMDN3)
regulator of microtubule dynamics 3 		ENST00000260385 (RMDN3-001) 40735884-40755851 protein_coding
ENST00000338376 (RMDN3-003) 40735888-40755260 protein_coding
ENST00000557831 (RMDN3-006) 40736338-40737820 retained_intron
ENST00000558232 (RMDN3-012) 40736427-40745211 protein_coding
ENST00000558364 (RMDN3-009) 40740150-40747782 processed_transcript
ENST00000558560 (RMDN3-010) 40737678-40752178 processed_transcript
ENST00000558777 (RMDN3-004) 40735888-40755246 nonsense_mediated_decay
ENST00000560460 (RMDN3-008) 40738510-40755253 protein_coding
ENST00000560588 (RMDN3-005) 40735885-40739680 retained_intron
ENST00000560779 (RMDN3-011) 40737629-40744305 retained_intron
ENST00000560905 (RMDN3-007) 40744094-40755336 protein_coding
ENSG00000137880 (GCHFR)
GTP cyclohydrolase I feedback regulator 		ENST00000260447 (GCHFR-001) 40764020-40767710 protein_coding
ENST00000558467 (GCHFR-006) 40765620-40767708 protein_coding
ENST00000558670 (GCHFR-004) 40764123-40767543 protein_coding
ENST00000559445 (GCHFR-002) 40764127-40767699 protein_coding
ENST00000559932 (GCHFR-005) 40764426-40767642 protein_coding
ENST00000561160 (GCHFR-003) 40764104-40766285 protein_coding
ENSG00000271236 (SUMO2P15)
SUMO2 pseudogene 15 		ENST00000604285 (SUMO2P15-001) 40760597-40760874 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00070C_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000070730-ENSMUSG00000046814 CGP 10090 2:119137001-119172390
GeneTranscriptPositionBiotype
ENSMUSG00000027323 (Rad51)
RAD51 homolog 		ENSMUST00000028795 (Rad51-001) 119112807-119137290 protein_coding
ENSMUST00000110828 (Rad51-004) 119112814-119133599 retained_intron
ENSMUST00000140939 (Rad51-005) 119112793-119123846 protein_coding
ENSMUST00000141389 (Rad51-006) 119118696-119122262 retained_intron
ENSMUST00000143934 (Rad51-002) 119134162-119135208 retained_intron
ENSMUST00000151406 (Rad51-008) 119123803-119147445 protein_coding
ENSMUST00000152327 (Rad51-003) 119112817-119137037 nonsense_mediated_decay
ENSMUST00000154683 (Rad51-007) 119131518-119134455 retained_intron
ENSMUSG00000046814 (Gchfr)
GTP cyclohydrolase I feedback regulator 		ENSMUST00000057454 (Gchfr-001) 119167773-119172390 protein_coding
ENSMUSG00000070730 (Rmdn3)
regulator of microtubule dynamics 3 		ENSMUST00000094695 (Rmdn3-001) 119137001-119157034 protein_coding
ENSMUST00000127965 (Rmdn3-007) 119139056-119140875 retained_intron
ENSMUST00000129351 (Rmdn3-003) 119154054-119156948 protein_coding
ENSMUST00000130249 (Rmdn3-005) 119146155-119147445 retained_intron
ENSMUST00000135419 (Rmdn3-004) 119154024-119156824 protein_coding
ENSMUST00000139519 (Rmdn3-002) 119154064-119156964 protein_coding
ENSMUST00000156332 (Rmdn3-006) 119142418-119147436 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00070C_0001ENSG00000104129ENST00000220496ENST00000558769ENST00000559310ENST00000561110ENSG00000137824ENST00000260385ENST00000338376ENST00000557831ENST00000558232ENST00000558364ENST00000558777ENST00000560588ENST00000560905ENSG00000137880ENST00000260447ENSG00000271236ENST00000604285CIL_00070C_0002ENSMUSG00000027323ENSMUST00000028795ENSMUST00000151406ENSMUST00000152327ENSMUSG00000046814ENSMUST00000057454ENSMUSG00000070730ENSMUST00000094695ENSMUST00000127965ENSMUST00000129351ENSMUST00000135419ENSMUST00000139519
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000104129 ENST00000220496 5.564±0.00 2.641±0.00 N/A 1.795±0.97 3.956±0.00 1.287±0.51 0.694±0.35 4.172±0.00 4.457±3.92 6.313±0.00 0.646±0.00 4.320±2.19 4.188±0.96 1.896±0.68
ENST00000558727 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558769 N/A N/A 3.121±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559310 N/A N/A N/A 4.061±0.00 2.942±0.00 N/A 1.015±0.00 N/A N/A 2.198±0.00 N/A N/A N/A N/A
ENST00000560065 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560301 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561018 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561110 N/A 12.079±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000137824 ENST00000260385 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A
ENST00000338376 15.397±0.00 7.563±0.00 N/A 8.542±7.41 11.653±10.64 5.737±5.35 5.139±0.00 7.097±6.43 8.251±6.50 10.691±8.69 7.353±0.00 9.489±7.08 13.514±7.37 9.903±5.47
ENST00000557831 N/A N/A N/A N/A N/A 1.541±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558232 N/A N/A N/A N/A N/A N/A N/A 0.834±0.00 N/A N/A N/A N/A N/A N/A
ENST00000558364 N/A N/A 1.658±0.00 N/A 0.929±0.00 N/A N/A N/A N/A N/A N/A 7.627±4.86 11.166±0.00 16.920±0.00
ENST00000558560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558777 N/A 4.697±0.00 0.484±0.00 8.276±0.00 N/A N/A N/A 2.859±1.15 1.994±0.00 N/A 0.074±0.00 N/A 3.680±0.00 N/A
ENST00000560460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560588 N/A 1.636±0.00 N/A 0.769±0.00 0.272±0.00 0.585±0.00 N/A N/A N/A 1.163±0.00 N/A N/A N/A N/A
ENST00000560779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560905 N/A N/A N/A 1.377±0.00 0.881±0.00 0.982±0.00 0.349±0.00 N/A N/A N/A N/A 8.663±0.00 12.859±0.00 12.746±0.00
ENSG00000137880 ENST00000260447 N/A N/A N/A N/A N/A N/A N/A 4.709±0.00 30.722±0.00 N/A N/A N/A N/A N/A
ENST00000558467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559445 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000271236 ENST00000604285 N/A 0.557±0.00 N/A 0.154±0.00 0.589±0.00 N/A 0.094±0.00 N/A N/A N/A N/A 0.885±0.58 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027323 ENSMUST00000028795 N/A N/A N/A 2.213±0.36 N/A N/A N/A N/A 8.592±4.04 N/A 0.290±0.06 1.362±0.00 10.815±0.00 1.561±0.06
ENSMUST00000110828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151406 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.967±1.20 N/A 5.365±1.11
ENSMUST00000152327 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.330±0.01 1.557±0.33 7.553±2.15 1.191±0.00
ENSMUST00000154683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000046814 ENSMUST00000057454 11.555±10.61 23.676±3.13 0.371±0.01 1.294±0.76 42.898±15.83 8.409±1.17 9.945±4.65 63.876±6.34 184.078±131.93 16.110±0.83 0.157±0.06 5.509±3.13 8.001±4.85 4.175±2.28
ENSMUSG00000070730 ENSMUST00000094695 18.906±3.35 15.286±7.38 12.542±1.17 11.502±3.28 13.610±4.40 13.063±5.06 4.989±0.65 15.417±0.44 19.945±4.06 10.715±0.54 1.563±0.47 6.305±2.95 34.023±10.64 5.293±1.19
ENSMUST00000127965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.955±0.00 N/A N/A N/A
ENSMUST00000129351 N/A 56.133±27.40 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135419 N/A 19.281±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139519 N/A 5.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156332 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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