C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 28 (concentrative nucleoside transporter), member 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137860 SLC28A2 9606 + 15:45252230-45277845 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000347644 SLC28A2-001 45252230-45277845 protein_coding
  ENST00000559924 SLC28A2-004 45263061-45267752 nonsense_mediated_decay
  ENST00000560438 SLC28A2-003 45252234-45264683 protein_coding
  ENST00000560767 SLC28A2-002 45271774-45275951 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000347644ENST00000559924ENST00000560767
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000347644 0.061±0.00 0.046±0.00 N/A 0.063±0.04 0.083±0.00 0.472±0.00 0.042±0.00 0.039±0.00 0.018±0.00 0.016±0.00 0.064±0.03 0.026±0.00 0.162±0.06
ENST00000559924 N/A N/A 0.473±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.292±0.00
ENST00000560767 N/A N/A N/A N/A 0.137±0.04 0.288±0.00 N/A 0.040±0.00 0.116±0.00 N/A N/A 0.032±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NE CIL_0004NE_0001 CGP 15:45167214-45277845
CIL_0004ND CIL_0004ND_0001 CGP 15:45252230-45402327

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001882 IEA nucleoside binding
GO:0005415 IEA nucleoside:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006139 TAS nucleobase-containing compound metabolic process
GO:0006810 IEA transport
GO:0015211 TAS purine nucleoside transmembrane transporter activity
GO:0015860 TAS purine nucleoside transmembrane transport
GO:0016020 TAS:IEA membrane
GO:0055085 TAS transmembrane transport
GO:1901642 IEA nucleoside transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060879 SLC28A2 solute carrier family 28 (concentrative nucleoside transporter), member 2 protein_coding Danio_rerio
ENSMUSG00000027219 Slc28a2 solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 protein_coding Mus_musculus
ENSMUSG00000079071 Gm14085 predicted gene 14085 protein_coding Mus_musculus

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