C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 28 (concentrative nucleoside transporter), member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000347644 SLC28A2-001 ENSG00000137860 9606 + 15:45252230-45277845 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000347644
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000347644 0.061±0.00 0.046±0.00 0.063±0.04 0.083±0.00 0.472±0.00 0.042±0.00 0.039±0.00 0.018±0.00 0.016±0.00 0.064±0.03 0.026±0.00 0.162±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004NE CIL_0004NE_0001 CGP 15:45167214-45277845
CIL_0004ND CIL_0004ND_0001 CGP 15:45252230-45402327

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001882 IEA nucleoside binding
GO:0005415 IEA nucleoside:sodium symporter activity
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0006139 TAS nucleobase-containing compound metabolic process
GO:0006810 IEA transport
GO:0015211 TAS purine nucleoside transmembrane transporter activity
GO:0015860 TAS purine nucleoside transmembrane transport
GO:0016020 TAS:IEA membrane
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028652 Slc28a2-201 protein_coding Mus_musculus 0 1847
ENSMUST00000110524 Slc28a2-002 protein_coding Mus_musculus 0 1847
ENSMUST00000110525 Slc28a2-001 protein_coding Mus_musculus 0 1847
ENSMUST00000110521 Gm14085-001 protein_coding Mus_musculus 0 1725

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