C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004NE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138606-ENSG00000137860 CGP 9606 15:45167214-45277845
GeneTranscriptPositionBiotype
ENSG00000137860 (SLC28A2)
solute carrier family 28 (concentrative nucleoside transporter), member 2 		ENST00000347644 (SLC28A2-001) 45252230-45277845 protein_coding
ENST00000559924 (SLC28A2-004) 45263061-45267752 nonsense_mediated_decay
ENST00000560438 (SLC28A2-003) 45252234-45264683 protein_coding
ENST00000560767 (SLC28A2-002) 45271774-45275951 processed_transcript
ENSG00000138606 (SHF)
Src homology 2 domain containing F 		ENST00000290894 (SHF-001) 45167214-45201175 protein_coding
ENST00000458022 (SHF-008) 45167713-45181207 protein_coding
ENST00000558294 (SHF-012) 45167834-45175326 protein_coding
ENST00000558685 (SHF-011) 45171846-45175269 protein_coding
ENST00000559566 (SHF-009) 45171594-45178260 protein_coding
ENST00000560471 (SHF-006) 45170666-45187955 protein_coding
ENST00000560540 (SHF-002) 45167214-45187956 protein_coding
ENST00000560734 (SHF-004) 45167251-45187952 protein_coding
ENST00000561091 (SHF-014) 45174223-45187459 processed_transcript
ENST00000561239 (SHF-013) 45170208-45173658 protein_coding
ENST00000561278 (SHF-010) 45175380-45201116 protein_coding
ENSG00000259338 (CTD-2651B20.2)
 ENST00000559063 (CTD-2651B20.2-001) 45215547-45215943 processed_pseudogene
ENSG00000259519 (RP11-519G16.2)
 ENST00000560034 (RP11-519G16.2-001) 45170344-45199958 antisense
ENSG00000259520 (CTD-2651B20.3)
 ENST00000559003 (CTD-2651B20.3-003) 45251580-45256002 antisense
ENST00000560344 (CTD-2651B20.3-001) 45253506-45279227 antisense
ENST00000561404 (CTD-2651B20.3-002) 45255124-45279251 antisense
ENSG00000260035 (CTD-2651B20.6)
 ENST00000563103 (CTD-2651B20.6-001) 45200325-45200632 sense_intronic
ENSG00000279014 (CTD-2651B20.8)
 ENST00000623237 (CTD-2651B20.8-001) 45214448-45215044 TEC
CIL_0004NE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000033256-ENSMUSG00000027219 CGP 10090 2:122348892-122461137
GeneTranscriptPositionBiotype
ENSMUSG00000027219 (Slc28a2)
solute carrier family 28 (sodium-coupled nucleoside transporter), member 2 		ENSMUST00000028652 (Slc28a2-201) 122439747-122461130 protein_coding
ENSMUST00000110524 (Slc28a2-002) 122440763-122461133 protein_coding
ENSMUST00000110525 (Slc28a2-001) 122426477-122461137 protein_coding
ENSMUST00000139850 (Slc28a2-003) 122426494-122440969 processed_transcript
ENSMUST00000153848 (Slc28a2-004) 122456399-122460551 processed_transcript
ENSMUSG00000033256 (Shf)
Src homology 2 domain containing F 		ENSMUST00000048635 (Shf-001) 122348892-122366828 protein_coding
ENSMUST00000110530 (Shf-007) 122349199-122358266 protein_coding
ENSMUST00000110531 (Shf-201) 122348893-122368918 protein_coding
ENSMUST00000110532 (Shf-004) 122349128-122368832 protein_coding
ENSMUST00000121237 (Shf-008) 122349199-122358240 protein_coding
ENSMUST00000125826 (Shf-003) 122349128-122369162 protein_coding
ENSMUST00000135848 (Shf-006) 122349504-122354131 retained_intron
ENSMUST00000139819 (Shf-005) 122349128-122359586 protein_coding
ENSMUST00000143484 (Shf-009) 122349388-122357220 protein_coding
ENSMUST00000151130 (Shf-002) 122349128-122369137 protein_coding
ENSMUSG00000083645 (Gm14086)
predicted gene 14086 		ENSMUST00000117152 (Gm14086-001) 122427194-122427469 unprocessed_pseudogene
ENSMUSG00000088506 (Gm24409)
predicted gene, 24409 		ENSMUST00000157881 (Gm24409-201) 122385489-122385640 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NE_0001ENSG00000137860ENST00000347644ENST00000559924ENST00000560438ENST00000560767ENSG00000138606ENST00000290894ENST00000458022ENST00000558294ENST00000558685ENST00000559566ENST00000560471ENST00000560540ENST00000560734ENST00000561091ENST00000561239ENST00000561278ENSG00000259338ENST00000559063ENSG00000259519ENST00000560034ENSG00000259520ENST00000559003ENST00000560344ENST00000561404ENSG00000260035ENST00000563103ENSG00000279014ENST00000623237CIL_0004NE_0002ENSMUSG00000027219ENSMUST00000028652ENSMUST00000110524ENSMUST00000110525ENSMUST00000139850ENSMUST00000153848ENSMUSG00000033256ENSMUST00000048635ENSMUST00000110530ENSMUST00000110531ENSMUST00000110532ENSMUST00000121237ENSMUST00000125826ENSMUST00000135848ENSMUST00000139819ENSMUST00000143484ENSMUST00000151130ENSMUSG00000083645ENSMUST00000117152ENSMUSG00000088506ENSMUST00000157881
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NE_0001ENSG00000137860ENST00000347644ENST00000559924ENST00000560767ENSG00000138606ENST00000290894ENST00000458022ENST00000560471ENST00000560540ENST00000560734ENSG00000259338ENST00000559063ENSG00000259519ENST00000560034ENSG00000259520ENST00000559003ENST00000560344ENST00000561404ENSG00000260035ENST00000563103ENSG00000279014ENST00000623237CIL_0004NE_0002ENSMUSG00000027219ENSMUST00000028652ENSMUST00000110524ENSMUST00000110525ENSMUST00000153848ENSMUSG00000033256ENSMUST00000048635ENSMUST00000110530ENSMUST00000110531ENSMUST00000110532ENSMUST00000121237ENSMUST00000125826ENSMUST00000135848ENSMUST00000139819ENSMUST00000143484ENSMUST00000151130ENSMUSG00000083645ENSMUST00000117152ENSMUSG00000088506ENSMUST00000157881
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137860 ENST00000347644 0.061±0.00 0.046±0.00 N/A 0.063±0.04 0.083±0.00 0.472±0.00 0.042±0.00 N/A 0.039±0.00 0.018±0.00 0.016±0.00 0.064±0.03 0.026±0.00 0.162±0.06
ENST00000559924 N/A N/A 0.473±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.292±0.00
ENST00000560438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560767 N/A N/A N/A N/A 0.137±0.04 0.288±0.00 N/A N/A 0.040±0.00 0.116±0.00 N/A N/A 0.032±0.00 N/A
ENSG00000138606 ENST00000290894 N/A N/A N/A N/A N/A N/A 1.049±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000458022 N/A N/A 0.494±0.00 N/A N/A N/A N/A N/A 3.454±0.00 N/A N/A N/A N/A N/A
ENST00000558294 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558685 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560471 N/A N/A N/A 2.533±1.23 0.622±0.00 N/A N/A 0.304±0.00 N/A N/A N/A N/A N/A N/A
ENST00000560540 2.609±0.00 2.754±0.00 N/A N/A 2.162±0.00 7.477±0.00 N/A N/A 6.015±0.00 N/A N/A 13.082±1.95 N/A 9.168±0.00
ENST00000560734 1.998±0.00 N/A N/A N/A N/A N/A 1.569±0.00 1.833±0.00 4.450±0.00 N/A 0.867±0.00 9.003±0.00 N/A N/A
ENST00000561091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561239 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561278 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000259338 ENST00000559063 N/A N/A N/A 0.051±0.00 N/A 0.089±0.00 N/A N/A 0.084±0.00 N/A N/A 0.259±0.00 N/A 0.257±0.21
ENSG00000259519 ENST00000560034 5.275±0.00 7.256±0.00 N/A N/A 3.733±0.00 N/A N/A N/A N/A N/A 1.859±0.00 N/A N/A N/A
ENSG00000259520 ENST00000559003 0.361±0.00 0.854±0.00 N/A 0.352±0.25 0.342±0.00 0.491±0.00 0.343±0.00 N/A N/A 0.123±0.00 0.066±0.00 N/A N/A 0.486±0.00
ENST00000560344 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.070±0.00 N/A
ENST00000561404 N/A 0.371±0.00 N/A 0.304±0.00 N/A N/A 0.118±0.00 N/A 0.180±0.00 0.205±0.00 N/A N/A N/A N/A
ENSG00000260035 ENST00000563103 N/A N/A N/A 0.387±0.00 N/A N/A N/A N/A 0.131±0.00 N/A N/A 1.093±0.00 N/A N/A
ENSG00000279014 ENST00000623237 N/A N/A N/A N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A 0.071±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027219 ENSMUST00000028652 N/A N/A N/A 0.011±0.00 N/A N/A N/A 0.087±0.00 0.039±0.02 N/A N/A 0.199±0.04 0.117±0.03 0.045±0.03
ENSMUST00000110524 3.059±1.08 0.706±0.52 0.775±0.11 0.011±0.00 7.725±0.74 0.706±0.17 3.626±1.19 0.438±0.17 0.342±0.32 0.798±0.51 2.892±0.53 0.350±0.33 1.075±0.64 0.074±0.04
ENSMUST00000110525 3.226±2.10 0.559±0.17 0.311±0.11 N/A 1.855±0.24 0.103±0.00 2.245±1.17 0.144±0.08 0.053±0.00 0.238±0.07 0.997±0.20 0.244±0.16 0.177±0.00 N/A
ENSMUST00000139850 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153848 N/A N/A N/A 0.068±0.00 N/A N/A N/A N/A 0.238±0.00 N/A N/A 0.526±0.19 N/A 0.128±0.00
ENSMUSG00000033256 ENSMUST00000048635 0.825±0.24 0.823±0.00 N/A N/A 1.569±0.96 3.361±1.50 0.104±0.00 1.573±0.36 1.554±0.24 0.573±0.08 N/A 2.374±1.10 0.706±0.00 N/A
ENSMUST00000110530 2.068±0.27 N/A N/A N/A 1.814±0.69 N/A 0.244±0.00 1.719±0.69 2.114±0.89 0.627±0.00 N/A 3.499±0.80 3.124±0.00 N/A
ENSMUST00000110531 0.742±0.13 0.966±0.31 1.500±0.12 4.917±1.22 0.569±0.00 1.333±0.18 0.309±0.09 1.081±0.38 1.709±0.47 0.353±0.04 0.320±0.13 1.098±0.00 2.428±0.61 2.533±0.60
ENSMUST00000110532 N/A N/A N/A 12.123±0.00 N/A N/A N/A N/A N/A N/A 0.516±0.41 6.856±5.17 4.620±1.05 2.365±0.00
ENSMUST00000121237 N/A 1.273±0.00 0.995±0.07 N/A 2.363±0.91 3.101±0.24 0.497±0.02 2.227±0.77 1.496±0.49 0.646±0.09 0.285±0.11 2.867±1.06 1.258±0.23 3.067±0.75
ENSMUST00000125826 0.546±0.00 0.905±0.00 0.577±0.00 N/A 0.988±0.38 1.586±0.61 N/A 0.563±0.09 0.475±0.06 0.382±0.00 N/A 1.130±0.14 2.463±1.97 1.072±0.36
ENSMUST00000135848 N/A 3.184±0.69 N/A N/A N/A N/A N/A N/A N/A 1.645±0.00 N/A 6.268±1.93 N/A N/A
ENSMUST00000139819 N/A N/A N/A 12.341±5.19 N/A N/A 0.517±0.16 N/A N/A 0.477±0.00 0.417±0.12 N/A N/A 1.242±0.39
ENSMUST00000143484 N/A N/A N/A N/A 0.888±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151130 0.586±0.01 0.714±0.30 0.768±0.00 N/A 1.631±0.28 1.647±0.70 0.165±0.03 1.373±0.00 0.870±0.29 0.300±0.08 0.205±0.07 1.796±0.19 1.083±0.59 N/A
ENSMUSG00000083645 ENSMUST00000117152 67.793±0.00 N/A 1.592±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000088506 ENSMUST00000157881 N/A N/A N/A N/A 833.062±158.19 324.443±0.00 N/A 348.402±32.91 2.009±0.00 298.156±11.17 N/A 1876.540±0.00 N/A 1371.593±410.81

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