C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RNA 3'-terminal phosphate cyclase
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000137996 RTCA 9606 + 1:100266207-100292769 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260563 RTCA-002 100266249-100291771 protein_coding
  ENST00000370126 RTCA-003 100266289-100266929 protein_coding
  ENST00000370128 RTCA-001 100266207-100292769 protein_coding
  ENST00000483474 RTCA-004 100266246-100273452 processed_transcript
  ENST00000498617 RTCA-005 100266216-100274843 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260563ENST00000370128ENST00000498617
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260563 8.607±0.00 8.572±0.00 2.318±0.00 7.389±0.00 6.121±4.47 13.573±0.00 5.362±3.73 6.183±4.15 3.293±1.16 4.152±0.29 4.742±0.00 7.099±5.71 10.117±6.73 10.408±1.39
ENST00000370128 2.605±0.00 N/A 2.826±0.00 5.796±3.88 2.536±1.55 3.045±0.51 3.204±0.33 3.535±3.01 2.140±1.63 1.159±0.52 2.619±0.32 2.533±0.46 3.018±0.23 2.034±0.60
ENST00000498617 N/A N/A N/A N/A N/A 2.811±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0003824 IEA catalytic activity
GO:0003963 IEA RNA-3'-phosphate cyclase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006396 IEA RNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000002215 rtca RNA 3'-terminal phosphate cyclase protein_coding Danio_rerio
ENSMUSG00000000339 Rtca RNA 3'-terminal phosphate cyclase protein_coding Mus_musculus

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