C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA 3'-terminal phosphate cyclase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260563 RTCA-002 ENSG00000137996 9606 + 1:100266249-100291771 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260563
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260563 8.607±0.00 8.572±0.00 2.318±0.00 7.389±0.00 6.121±4.47 13.573±0.00 5.362±3.73 6.183±4.15 3.293±1.16 4.152±0.29 4.742±0.00 7.099±5.71 10.117±6.73 10.408±1.39

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0003824 IEA catalytic activity
GO:0003963 IEA RNA-3'-phosphate cyclase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006396 IEA RNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000348 Rtca-001 protein_coding Mus_musculus 0 1026
ENSMUST00000140677 Rtca-003 nonsense_mediated_decay Mus_musculus 0 798

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