C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA 3'-terminal phosphate cyclase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370128 RTCA-001 ENSG00000137996 9606 + 1:100266207-100292769 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370128
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370128 2.605±0.00 2.826±0.00 5.796±3.88 2.536±1.55 3.045±0.51 3.204±0.33 3.535±3.01 2.140±1.63 1.159±0.52 2.619±0.32 2.533±0.46 3.018±0.23 2.034±0.60

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 TAS RNA binding
GO:0003824 IEA catalytic activity
GO:0003963 IEA RNA-3'-phosphate cyclase activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0006396 IEA RNA processing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000348 Rtca-001 protein_coding Mus_musculus 0 1184
ENSMUST00000140677 Rtca-003 nonsense_mediated_decay Mus_musculus 0 822

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