C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: intraflagellar transport 172
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138002 IFT172 9606 - 2:27444371-27489789 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000260570 IFT172-001 27444371-27489757 protein_coding
  ENST00000359466 IFT172-004 27471687-27489773 protein_coding
  ENST00000416524 IFT172-005 27472012-27489789 protein_coding
  ENST00000420854 IFT172-016 27445444-27447922 nonsense_mediated_decay
  ENST00000443889 IFT172-012 27453137-27454636 protein_coding
  ENST00000450564 IFT172-010 27448915-27454134 nonsense_mediated_decay
  ENST00000463613 IFT172-007 27470781-27471277 retained_intron
  ENST00000475476 IFT172-006 27483883-27489754 retained_intron
  ENST00000475909 IFT172-011 27453138-27453768 retained_intron
  ENST00000476264 IFT172-002 27472343-27489733 retained_intron
  ENST00000476693 IFT172-009 27457893-27459113 retained_intron
  ENST00000479419 IFT172-015 27445307-27446205 retained_intron
  ENST00000480892 IFT172-013 27445941-27447576 retained_intron
  ENST00000489492 IFT172-008 27465202-27466081 retained_intron
  ENST00000494163 IFT172-014 27445020-27446196 retained_intron
  ENST00000507184 IFT172-017 27444398-27489701 retained_intron
  ENST00000509128 IFT172-019 27444377-27454087 nonsense_mediated_decay
  ENST00000511842 IFT172-018 27470813-27489678 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260570ENST00000359466ENST00000416524ENST00000450564ENST00000507184ENST00000509128ENST00000511842
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260570 0.455±0.00 N/A N/A 2.145±0.21 1.019±0.00 1.317±0.20 1.539±1.00 1.610±1.45 0.895±0.66 2.012±0.38 0.555±0.00 3.208±2.69 1.082±0.26 12.196±3.86
ENST00000359466 N/A N/A N/A N/A 1.822±0.00 N/A 1.114±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000416524 N/A N/A N/A N/A N/A N/A N/A N/A 2.200±0.00 N/A N/A N/A N/A N/A
ENST00000450564 2.603±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.322±0.00 41.005±0.00
ENST00000507184 1.185±0.00 1.523±0.00 0.763±0.00 1.340±0.00 0.892±0.52 1.030±0.24 0.256±0.00 1.241±0.00 0.679±0.00 0.731±0.20 N/A 1.853±0.23 0.418±0.00 8.981±0.00
ENST00000509128 N/A N/A N/A N/A 3.703±0.00 N/A N/A 4.683±0.00 0.764±0.00 4.705±0.00 N/A 7.894±0.97 N/A 10.890±0.00
ENST00000511842 N/A N/A 1.742±0.00 N/A 2.102±0.00 2.156±0.00 1.210±0.00 0.556±0.00 3.341±0.00 1.826±0.00 N/A 1.730±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012H CIL_00012H_0001 CGP 2:27427790-27446481
CIL_0001DG CIL_0001DG_0001 CGP 2:27442366-27489789
CIL_00010D CIL_00010D_0001 CGP 2:27444371-27495245

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001841 IEA neural tube formation
GO:0001843 IEA neural tube closure
GO:0001947 IEA heart looping
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005929 ISS cilium
GO:0005930 IBA axoneme
GO:0007219 IEA Notch signaling pathway
GO:0007224 IEA smoothened signaling pathway
GO:0007368 IEA determination of left/right symmetry
GO:0007420 IEA brain development
GO:0007507 IEA heart development
GO:0008544 IEA epidermis development
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0009953 IEA dorsal/ventral pattern formation
GO:0016485 IEA protein processing
GO:0021522 IEA spinal cord motor neuron differentiation
GO:0021915 IEA neural tube development
GO:0030992 IBA intraciliary transport particle B
GO:0031122 IEA cytoplasmic microtubule organization
GO:0031982 IDA vesicle
GO:0036064 IBA ciliary basal body
GO:0042384 ISS cilium assembly
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0060021 IEA palate development
GO:0060173 IEA limb development
GO:0060271 IEA cilium morphogenesis
GO:0060348 IEA bone development
GO:0061525 IEA hindgut development
GO:0070986 IEA left/right axis specification
GO:0097225 IEA sperm midpiece
GO:0097228 IEA sperm principal piece
GO:0097598 IEA sperm cytoplasmic droplet

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041870 ift172 intraflagellar transport 172 protein_coding Danio_rerio
ENSMUSG00000038564 Ift172 intraflagellar transport 172 protein_coding Mus_musculus

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