C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00010D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138002-ENSG00000115226 CGP 9606 2:27444371-27495245
GeneTranscriptPositionBiotype
ENSG00000115226 (FNDC4)
fibronectin type III domain containing 4 		ENST00000264703 (FNDC4-001) 27491883-27495245 protein_coding
ENST00000476197 (FNDC4-003) 27492713-27494812 retained_intron
ENST00000491414 (FNDC4-002) 27491901-27495162 retained_intron
ENSG00000138002 (IFT172)
intraflagellar transport 172 		ENST00000260570 (IFT172-001) 27444371-27489757 protein_coding
ENST00000359466 (IFT172-004) 27471687-27489773 protein_coding
ENST00000416524 (IFT172-005) 27472012-27489789 protein_coding
ENST00000420854 (IFT172-016) 27445444-27447922 nonsense_mediated_decay
ENST00000443889 (IFT172-012) 27453137-27454636 protein_coding
ENST00000450564 (IFT172-010) 27448915-27454134 nonsense_mediated_decay
ENST00000463613 (IFT172-007) 27470781-27471277 retained_intron
ENST00000475476 (IFT172-006) 27483883-27489754 retained_intron
ENST00000475909 (IFT172-011) 27453138-27453768 retained_intron
ENST00000476264 (IFT172-002) 27472343-27489733 retained_intron
ENST00000476693 (IFT172-009) 27457893-27459113 retained_intron
ENST00000479419 (IFT172-015) 27445307-27446205 retained_intron
ENST00000480892 (IFT172-013) 27445941-27447576 retained_intron
ENST00000489492 (IFT172-008) 27465202-27466081 retained_intron
ENST00000494163 (IFT172-014) 27445020-27446196 retained_intron
ENST00000507184 (IFT172-017) 27444398-27489701 retained_intron
ENST00000509128 (IFT172-019) 27444377-27454087 nonsense_mediated_decay
ENST00000511842 (IFT172-018) 27470813-27489678 retained_intron
ENSG00000157992 (KRTCAP3)
keratinocyte associated protein 3 		ENST00000288873 (KRTCAP3-001) 27442381-27444297 protein_coding
ENST00000407293 (KRTCAP3-002) 27442446-27444297 protein_coding
ENST00000452499 (KRTCAP3-006) 27443452-27446479 protein_coding
ENST00000453171 (KRTCAP3-003) 27442398-27444295 nonsense_mediated_decay
ENST00000464699 (KRTCAP3-004) 27442745-27444297 retained_intron
ENST00000494572 (KRTCAP3-005) 27443254-27444291 retained_intron
ENST00000543753 (KRTCAP3-201) 27442366-27446481 protein_coding
ENSG00000235267 (AC074117.13)
 ENST00000417130 (AC074117.13-001) 27455156-27455862 processed_pseudogene
CIL_00010D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000038564-ENSMUSG00000038552 CGP 10090 5:31253280-31295877
GeneTranscriptPositionBiotype
ENSMUSG00000038552 (Fndc4)
fibronectin type III domain containing 4 		ENSMUST00000041266 (Fndc4-201) 31292886-31295871 protein_coding
ENSMUST00000172435 (Fndc4-202) 31292255-31295877 protein_coding
ENSMUSG00000038564 (Ift172)
intraflagellar transport 172 		ENSMUST00000041565 (Ift172-201) 31253280-31291114 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00010D_0001ENSG00000115226ENST00000264703ENST00000476197ENST00000491414ENSG00000138002ENST00000260570ENST00000359466ENST00000416524ENST00000420854ENST00000443889ENST00000450564ENST00000463613ENST00000475476ENST00000475909ENST00000476264ENST00000476693ENST00000479419ENST00000480892ENST00000489492ENST00000494163ENST00000507184ENST00000509128ENST00000511842ENSG00000157992ENST00000288873ENST00000407293ENST00000452499ENST00000453171ENST00000464699ENST00000494572ENST00000543753ENSG00000235267ENST00000417130CIL_00010D_0002ENSMUSG00000038552ENSMUST00000041266ENSMUST00000172435ENSMUSG00000038564ENSMUST00000041565
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00010D_0001ENSG00000115226ENST00000264703ENST00000476197ENST00000491414ENSG00000138002ENST00000260570ENST00000359466ENST00000416524ENST00000450564ENST00000507184ENST00000509128ENST00000511842ENSG00000157992ENST00000288873ENST00000407293ENST00000453171ENST00000494572ENSG00000235267ENST00000417130CIL_00010D_0002ENSMUSG00000038552ENSMUST00000041266ENSMUST00000172435ENSMUSG00000038564ENSMUST00000041565
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115226 ENST00000264703 23.270±0.00 3.826±0.00 N/A 16.935±15.84 7.710±7.56 3.883±3.26 1.496±0.00 5.351±0.00 47.689±47.41 4.395±0.00 0.043±0.00 20.706±19.40 3.821±0.00 6.444±4.68
ENST00000476197 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.294±0.00 0.944±0.00 4.039±0.00
ENST00000491414 N/A N/A N/A 1.536±0.00 N/A N/A N/A 0.623±0.00 N/A 0.517±0.45 N/A 0.440±0.00 N/A N/A
ENSG00000138002 ENST00000260570 0.455±0.00 N/A N/A 2.145±0.21 1.019±0.00 1.317±0.20 1.539±1.00 1.610±1.45 0.895±0.66 2.012±0.38 0.555±0.00 3.208±2.69 1.082±0.26 12.196±3.86
ENST00000359466 N/A N/A N/A N/A 1.822±0.00 N/A 1.114±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000416524 N/A N/A N/A N/A N/A N/A N/A N/A 2.200±0.00 N/A N/A N/A N/A N/A
ENST00000420854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450564 2.603±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.322±0.00 41.005±0.00
ENST00000463613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507184 1.185±0.00 1.523±0.00 0.763±0.00 1.340±0.00 0.892±0.52 1.030±0.24 0.256±0.00 1.241±0.00 0.679±0.00 0.731±0.20 N/A 1.853±0.23 0.418±0.00 8.981±0.00
ENST00000509128 N/A N/A N/A N/A 3.703±0.00 N/A N/A 4.683±0.00 0.764±0.00 4.705±0.00 N/A 7.894±0.97 N/A 10.890±0.00
ENST00000511842 N/A N/A 1.742±0.00 N/A 2.102±0.00 2.156±0.00 1.210±0.00 0.556±0.00 3.341±0.00 1.826±0.00 N/A 1.730±0.00 N/A N/A
ENSG00000157992 ENST00000288873 N/A N/A N/A N/A N/A N/A N/A N/A 1.858±0.00 9.694±0.00 N/A 37.986±0.00 4.261±0.00 N/A
ENST00000407293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.045±0.00 N/A N/A
ENST00000452499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.990±0.00 N/A
ENST00000464699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494572 N/A N/A N/A N/A N/A N/A N/A 2.434±0.00 N/A N/A N/A 33.181±0.00 N/A N/A
ENST00000543753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235267 ENST00000417130 0.033±0.00 0.103±0.00 N/A 0.070±0.00 0.101±0.00 N/A 0.060±0.00 N/A 0.425±0.00 N/A 0.208±0.00 0.205±0.08 N/A 0.052±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038552 ENSMUST00000041266 2.856±2.36 2.347±0.56 2.062±0.00 30.082±21.05 1.354±0.23 0.614±0.00 1.268±0.35 1.657±0.50 11.603±10.25 0.991±0.00 0.238±0.07 10.337±4.72 8.903±6.02 0.666±0.48
ENSMUST00000172435 4.837±2.64 3.552±0.80 2.967±0.51 27.227±4.65 2.329±0.23 1.156±0.40 0.880±0.16 0.972±0.17 4.713±3.59 2.063±0.33 0.286±0.10 9.145±3.79 4.269±1.99 0.264±0.14
ENSMUSG00000038564 ENSMUST00000041565 7.019±1.40 3.237±1.11 6.434±0.08 13.159±7.26 4.752±0.75 3.324±0.39 4.772±0.26 5.506±0.57 1.825±0.35 8.534±0.34 5.235±0.26 10.722±4.33 2.921±1.31 60.726±16.36

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