C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00012H_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115216-ENSG00000157992 CGP 9606 2:27427790-27446481
GeneTranscriptPositionBiotype
ENSG00000115216 (NRBP1)
nuclear receptor binding protein 1 		ENST00000233557 (NRBP1-001) 27427790-27442259 protein_coding
ENST00000356442 (NRBP1-007) 27431677-27433707 protein_coding
ENST00000379852 (NRBP1-002) 27428640-27442255 protein_coding
ENST00000379863 (NRBP1-003) 27428653-27442255 protein_coding
ENST00000419281 (NRBP1-006) 27429183-27434500 protein_coding
ENST00000460499 (NRBP1-004) 27435582-27442255 retained_intron
ENST00000486701 (NRBP1-010) 27440315-27441501 retained_intron
ENST00000493746 (NRBP1-008) 27434471-27436011 retained_intron
ENST00000493768 (NRBP1-009) 27434045-27435169 retained_intron
ENSG00000138002 (IFT172)
intraflagellar transport 172 		ENST00000260570 (IFT172-001) 27444371-27489757 protein_coding
ENST00000359466 (IFT172-004) 27471687-27489773 protein_coding
ENST00000416524 (IFT172-005) 27472012-27489789 protein_coding
ENST00000420854 (IFT172-016) 27445444-27447922 nonsense_mediated_decay
ENST00000443889 (IFT172-012) 27453137-27454636 protein_coding
ENST00000450564 (IFT172-010) 27448915-27454134 nonsense_mediated_decay
ENST00000463613 (IFT172-007) 27470781-27471277 retained_intron
ENST00000475476 (IFT172-006) 27483883-27489754 retained_intron
ENST00000475909 (IFT172-011) 27453138-27453768 retained_intron
ENST00000476264 (IFT172-002) 27472343-27489733 retained_intron
ENST00000476693 (IFT172-009) 27457893-27459113 retained_intron
ENST00000479419 (IFT172-015) 27445307-27446205 retained_intron
ENST00000480892 (IFT172-013) 27445941-27447576 retained_intron
ENST00000489492 (IFT172-008) 27465202-27466081 retained_intron
ENST00000494163 (IFT172-014) 27445020-27446196 retained_intron
ENST00000507184 (IFT172-017) 27444398-27489701 retained_intron
ENST00000509128 (IFT172-019) 27444377-27454087 nonsense_mediated_decay
ENST00000511842 (IFT172-018) 27470813-27489678 retained_intron
ENSG00000157992 (KRTCAP3)
keratinocyte associated protein 3 		ENST00000288873 (KRTCAP3-001) 27442381-27444297 protein_coding
ENST00000407293 (KRTCAP3-002) 27442446-27444297 protein_coding
ENST00000452499 (KRTCAP3-006) 27443452-27446479 protein_coding
ENST00000453171 (KRTCAP3-003) 27442398-27444295 nonsense_mediated_decay
ENST00000464699 (KRTCAP3-004) 27442745-27444297 retained_intron
ENST00000494572 (KRTCAP3-005) 27443254-27444291 retained_intron
ENST00000543753 (KRTCAP3-201) 27442366-27446481 protein_coding

Homo sapiens Ensembl (GRCh38)

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CIL_00012H_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029148-ENSMUSG00000029149 CGP 10090 5:31240864-31253202
GeneTranscriptPositionBiotype
ENSMUSG00000029148 (Nrbp1)
nuclear receptor binding protein 1 		ENSMUST00000031034 (Nrbp1-001) 31240864-31251566 protein_coding
ENSMUST00000078312 (Nrbp1-002) 31240864-31251560 protein_coding
ENSMUST00000127415 (Nrbp1-011) 31250345-31251449 retained_intron
ENSMUST00000131493 (Nrbp1-010) 31249591-31250733 retained_intron
ENSMUST00000139602 (Nrbp1-006) 31240932-31247914 protein_coding
ENSMUST00000141973 (Nrbp1-007) 31240895-31245835 retained_intron
ENSMUST00000142646 (Nrbp1-009) 31247423-31249981 retained_intron
ENSMUST00000148107 (Nrbp1-008) 31243428-31244436 retained_intron
ENSMUST00000150101 (Nrbp1-003) 31249355-31251563 retained_intron
ENSMUST00000152534 (Nrbp1-005) 31240903-31244882 protein_coding
ENSMUST00000155934 (Nrbp1-004) 31240877-31244961 protein_coding
ENSMUSG00000029149 (Krtcap3)
keratinocyte associated protein 3 		ENSMUST00000054829 (Krtcap3-001) 31251706-31253197 protein_coding
ENSMUST00000075611 (Krtcap3-004) 31251725-31253197 protein_coding
ENSMUST00000114570 (Krtcap3-002) 31251722-31253202 protein_coding
ENSMUST00000128821 (Krtcap3-009) 31252555-31253197 retained_intron
ENSMUST00000134186 (Krtcap3-005) 31251716-31252891 retained_intron
ENSMUST00000142904 (Krtcap3-008) 31252336-31253199 retained_intron
ENSMUST00000144631 (Krtcap3-006) 31251762-31252698 retained_intron
ENSMUST00000148890 (Krtcap3-010) 31252480-31253197 retained_intron
ENSMUST00000152695 (Krtcap3-003) 31251691-31253197 retained_intron
ENSMUST00000156802 (Krtcap3-007) 31251927-31252996 retained_intron
ENSMUSG00000055424 (Gm9970)
predicted gene 9970 		ENSMUST00000068997 (Gm9970-201) 31240675-31241232 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00012H_0001ENSG00000115216ENST00000233557ENST00000356442ENST00000379852ENST00000379863ENST00000419281ENSG00000138002ENST00000260570ENST00000359466ENST00000416524ENST00000450564ENST00000507184ENST00000509128ENST00000511842ENSG00000157992ENST00000288873ENST00000407293ENST00000453171ENST00000494572CIL_00012H_0002ENSMUSG00000029148ENSMUST00000031034ENSMUST00000078312ENSMUST00000127415ENSMUST00000139602ENSMUST00000150101ENSMUST00000152534ENSMUSG00000029149ENSMUST00000054829ENSMUST00000075611ENSMUST00000114570ENSMUST00000128821ENSMUST00000134186ENSMUST00000142904ENSMUST00000144631ENSMUST00000148890ENSMUST00000152695ENSMUST00000156802ENSMUSG00000055424ENSMUST00000068997
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115216 ENST00000233557 N/A N/A 1.649±0.00 1.828±0.00 N/A N/A 1.145±0.00 1.361±0.00 3.161±0.00 1.953±0.00 1.348±0.00 N/A N/A N/A
ENST00000356442 N/A N/A N/A N/A N/A 9.877±0.00 6.132±0.00 N/A N/A N/A 14.890±0.00 11.013±0.00 N/A N/A
ENST00000379852 34.336±0.00 36.869±0.00 1.205±0.00 14.867±8.45 16.724±12.55 19.251±14.51 10.465±7.79 18.406±14.16 14.312±5.59 21.722±13.37 26.248±23.59 37.652±22.15 85.358±15.70 62.900±11.94
ENST00000379863 N/A N/A N/A 5.494±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 31.058±0.00 46.251±0.00 50.453±0.00
ENST00000460499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486701 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493768 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138002 ENST00000260570 0.455±0.00 N/A N/A 2.145±0.21 1.019±0.00 1.317±0.20 1.539±1.00 1.610±1.45 0.895±0.66 2.012±0.38 0.555±0.00 3.208±2.69 1.082±0.26 12.196±3.86
ENST00000359466 N/A N/A N/A N/A 1.822±0.00 N/A 1.114±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000416524 N/A N/A N/A N/A N/A N/A N/A N/A 2.200±0.00 N/A N/A N/A N/A N/A
ENST00000420854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443889 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000450564 2.603±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.322±0.00 41.005±0.00
ENST00000463613 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475476 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475909 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476264 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479419 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507184 1.185±0.00 1.523±0.00 0.763±0.00 1.340±0.00 0.892±0.52 1.030±0.24 0.256±0.00 1.241±0.00 0.679±0.00 0.731±0.20 N/A 1.853±0.23 0.418±0.00 8.981±0.00
ENST00000509128 N/A N/A N/A N/A 3.703±0.00 N/A N/A 4.683±0.00 0.764±0.00 4.705±0.00 N/A 7.894±0.97 N/A 10.890±0.00
ENST00000511842 N/A N/A 1.742±0.00 N/A 2.102±0.00 2.156±0.00 1.210±0.00 0.556±0.00 3.341±0.00 1.826±0.00 N/A 1.730±0.00 N/A N/A
ENSG00000157992 ENST00000288873 N/A N/A N/A N/A N/A N/A N/A N/A 1.858±0.00 9.694±0.00 N/A 37.986±0.00 4.261±0.00 N/A
ENST00000407293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.045±0.00 N/A N/A
ENST00000452499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453171 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.990±0.00 N/A
ENST00000464699 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494572 N/A N/A N/A N/A N/A N/A N/A 2.434±0.00 N/A N/A N/A 33.181±0.00 N/A N/A
ENST00000543753 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029148 ENSMUST00000031034 53.879±7.46 42.896±2.30 45.364±5.75 31.744±3.64 40.715±8.75 40.103±4.24 39.550±3.75 31.569±1.52 26.152±2.59 43.131±1.60 19.580±2.64 54.009±14.58 45.655±18.11 18.609±7.28
ENSMUST00000078312 N/A N/A N/A 19.499±0.97 N/A N/A N/A N/A N/A N/A 3.700±0.24 N/A N/A N/A
ENSMUST00000127415 N/A 53.854±3.37 N/A N/A 42.935±4.31 40.700±10.61 N/A 16.554±2.97 16.533±2.53 27.338±5.57 N/A 55.890±8.13 N/A N/A
ENSMUST00000131493 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139602 N/A N/A N/A 21.526±0.00 N/A N/A N/A N/A N/A N/A N/A 24.736±0.00 30.609±0.65 14.665±0.00
ENSMUST00000141973 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142646 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148107 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150101 N/A N/A N/A N/A 8.639±0.00 9.640±1.58 N/A N/A N/A 9.477±1.27 N/A N/A N/A N/A
ENSMUST00000152534 N/A N/A N/A 72.028±0.00 N/A N/A N/A N/A N/A N/A N/A 120.670±0.00 148.241±35.46 71.940±0.00
ENSMUST00000155934 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000029149 ENSMUST00000054829 6.262±0.68 N/A 8.324±3.19 N/A 6.531±0.81 82.121±11.90 N/A 4.736±0.93 2.339±1.37 16.161±3.79 N/A 10.304±5.00 5.053±2.97 1.919±0.92
ENSMUST00000075611 4.764±0.46 N/A 2.677±0.00 N/A 2.884±0.00 50.982±15.42 0.478±0.00 3.141±0.43 0.601±0.26 6.227±1.28 N/A 9.529±3.67 4.323±2.37 N/A
ENSMUST00000114570 N/A N/A N/A N/A N/A N/A N/A 2.403±0.00 N/A N/A N/A 1.738±0.00 N/A N/A
ENSMUST00000128821 N/A N/A N/A 1.646±0.49 N/A N/A N/A N/A N/A N/A 0.685±0.16 2.093±0.31 2.273±0.00 1.192±0.00
ENSMUST00000134186 2.127±1.53 2.164±0.36 7.349±2.29 1.684±0.63 3.160±0.42 16.791±4.95 0.794±0.33 1.445±0.06 1.183±0.32 4.280±0.78 0.800±0.39 5.532±1.12 2.659±0.45 1.214±0.24
ENSMUST00000142904 N/A N/A N/A 1.348±0.00 N/A N/A 0.974±0.00 N/A 1.143±0.15 N/A 1.065±0.33 N/A N/A 2.512±0.00
ENSMUST00000144631 4.037±2.59 1.641±0.18 6.412±2.91 N/A 6.249±1.01 38.980±0.00 1.239±0.19 1.375±0.00 1.071±0.45 7.490±0.92 0.734±0.18 6.247±2.42 5.534±2.89 2.432±0.68
ENSMUST00000148890 N/A N/A N/A 2.819±0.00 N/A N/A 1.027±0.00 N/A N/A N/A 0.879±0.15 4.776±1.16 3.868±0.00 1.442±0.00
ENSMUST00000152695 0.847±0.13 1.796±0.51 2.645±0.00 0.513±0.00 3.328±1.26 11.509±1.17 0.972±0.07 2.517±0.00 1.268±0.60 4.794±1.25 N/A 4.059±1.45 N/A 2.115±0.47
ENSMUST00000156802 4.176±2.03 N/A N/A N/A N/A N/A N/A 2.206±0.00 0.473±0.00 N/A 0.505±0.01 3.245±1.03 4.135±3.04 2.723±1.04
ENSMUSG00000055424 ENSMUST00000068997 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.207±4.00

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