C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 172
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260570 IFT172-001 ENSG00000138002 9606 - 2:27444371-27489757 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260570
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260570 0.455±0.00 2.145±0.21 1.019±0.00 1.317±0.20 1.539±1.00 1.610±1.45 0.895±0.66 2.012±0.38 0.555±0.00 3.208±2.69 1.082±0.26 12.196±3.86

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012H CIL_00012H_0001 CGP 2:27427790-27446481
CIL_0001DG CIL_0001DG_0001 CGP 2:27442366-27489789
CIL_00010D CIL_00010D_0001 CGP 2:27444371-27495245

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001841 IEA neural tube formation
GO:0001843 IEA neural tube closure
GO:0001947 IEA heart looping
GO:0005488 IEA binding
GO:0005515 IEA protein binding
GO:0005929 ISS cilium
GO:0005930 IBA axoneme
GO:0007219 IEA Notch signaling pathway
GO:0007224 IEA smoothened signaling pathway
GO:0007368 IEA determination of left/right symmetry
GO:0007420 IEA brain development
GO:0007507 IEA heart development
GO:0008544 IEA epidermis development
GO:0008589 IEA regulation of smoothened signaling pathway
GO:0009953 IEA dorsal/ventral pattern formation
GO:0016485 IEA protein processing
GO:0021522 IEA spinal cord motor neuron differentiation
GO:0021915 IEA neural tube development
GO:0030992 IBA intraciliary transport particle B
GO:0031122 IEA cytoplasmic microtubule organization
GO:0031982 IDA vesicle
GO:0036064 IBA ciliary basal body
GO:0042384 ISS cilium assembly
GO:0045880 IEA positive regulation of smoothened signaling pathway
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0060021 IEA palate development
GO:0060173 IEA limb development
GO:0060271 IEA cilium morphogenesis
GO:0060348 IEA bone development
GO:0061525 IEA hindgut development
GO:0070986 IEA left/right axis specification
GO:0097225 IEA sperm midpiece
GO:0097228 IEA sperm principal piece
GO:0097598 IEA sperm cytoplasmic droplet

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041565 Ift172-201 protein_coding Mus_musculus 0 6698

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