C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: leucine-rich pentatricopeptide repeat containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260665 LRPPRC-001 ENSG00000138095 9606 - 2:43886508-43996005 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000260665
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000260665 9.449±0.00 7.439±0.00 10.172±0.00 15.792±0.59 6.617±3.82 11.171±0.33 13.740±7.75 12.456±1.01 4.856±0.69 4.835±0.38 20.865±0.00 14.022±5.27 6.387±1.37 12.579±3.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001XN CIL_0001XN_0001 CGP 2:43838964-43996005
CIL_0001XM CIL_0001XM_0001 CGP 2:43886508-44244384

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000794 IDA condensed nuclear chromosome
GO:0000961 IEA negative regulation of mitochondrial RNA catabolic process
GO:0003697 IEA single-stranded DNA binding
GO:0003723 NAS RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005856 IDA cytoskeleton
GO:0005874 IDA microtubule
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008017 TAS microtubule binding
GO:0016020 IDA membrane
GO:0030529 IEA ribonucleoprotein complex
GO:0042645 IDA mitochondrial nucleoid
GO:0044822 IDA poly(A) RNA binding
GO:0047497 TAS mitochondrion transport along microtubule
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048487 IDA beta-tubulin binding
GO:0051028 IEA mRNA transport
GO:0070129 IEA regulation of mitochondrial translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112308 Lrpprc-001 protein_coding Mus_musculus 0 3053
ENSMUST00000160414 Lrpprc-005 retained_intron Mus_musculus 0 396
ENSMUST00000160011 Lrpprc-006 nonsense_mediated_decay Mus_musculus 0 394
ENSMUST00000162799 Lrpprc-007 processed_transcript Mus_musculus 0 220

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