C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SECIS binding protein 2-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138593 SECISBP2L 9606 - 15:48988476-49046563 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000261847 SECISBP2L-004 48988770-49046433 protein_coding
  ENST00000380927 SECISBP2L-003 48996384-49046446 protein_coding
  ENST00000557923 SECISBP2L-005 49037395-49046446 retained_intron
  ENST00000557940 SECISBP2L-011 49016917-49019647 retained_intron
  ENST00000558461 SECISBP2L-006 49016952-49017793 retained_intron
  ENST00000559122 SECISBP2L-009 48999920-49001941 processed_transcript
  ENST00000559198 SECISBP2L-008 49011547-49013141 retained_intron
  ENST00000559424 SECISBP2L-002 49016947-49046447 protein_coding
  ENST00000559471 SECISBP2L-001 48988638-49046563 protein_coding
  ENST00000561203 SECISBP2L-007 49016436-49017053 retained_intron
  ENST00000561428 SECISBP2L-010 48988476-48996489 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000261847ENST00000559471
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000261847 2.471±0.00 N/A N/A 7.859±4.70 1.593±0.68 2.874±0.71 2.059±0.00 1.982±0.00 N/A 0.806±0.00 0.407±0.00 1.122±0.00 1.205±0.64 1.473±0.00
ENST00000559471 4.884±0.00 2.100±0.00 4.264±0.00 17.540±1.26 2.943±0.18 5.882±0.00 2.953±0.23 3.657±0.85 4.496±3.34 14.072±10.46 2.361±0.49 2.745±1.71 3.161±0.34 3.213±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004N9 CIL_0004N9_0001 CGP 15:48877886-49046563
CIL_0002PL CIL_0002PL_0001 CGP 15:48988476-49155661

Gene Ontology
GO IDEvidence TypeGO Description
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078687 SECISBP2L SECIS binding protein 2-like protein_coding Danio_rerio
ENSMUSG00000035093 Secisbp2l SECIS binding protein 2-like protein_coding Mus_musculus

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