C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SECIS binding protein 2-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559471 SECISBP2L-001 ENSG00000138593 9606 - 15:48988638-49046563 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000559471
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000559471 4.884±0.00 2.100±0.00 4.264±0.00 17.540±1.26 2.943±0.18 5.882±0.00 2.953±0.23 3.657±0.85 4.496±3.34 14.072±10.46 2.361±0.49 2.745±1.71 3.161±0.34 3.213±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004N9 CIL_0004N9_0001 CGP 15:48877886-49046563
CIL_0002PL CIL_0002PL_0001 CGP 15:48988476-49155661

Gene Ontology

GO IDEvidence TypeGO Description
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000053699 Secisbp2l-001 protein_coding Mus_musculus 0 3559
ENSMUST00000139944 Secisbp2l-002 protein_coding Mus_musculus 0 1443
ENSMUST00000136450 Secisbp2l-003 retained_intron Mus_musculus 0 213

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