C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: La ribonucleoprotein domain family, member 1B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000138709 LARP1B 9606 + 4:128061268-128222931 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326639 LARP1B-001 128061268-128211988 protein_coding
  ENST00000394288 LARP1B-003 128061335-128108901 protein_coding
  ENST00000432347 LARP1B-004 128061348-128108901 protein_coding
  ENST00000503725 LARP1B-008 128179347-128222595 processed_transcript
  ENST00000506199 LARP1B-010 128179314-128222931 processed_transcript
  ENST00000507259 LARP1B-007 128122117-128222926 nonsense_mediated_decay
  ENST00000507377 LARP1B-006 128077841-128122352 protein_coding
  ENST00000508648 LARP1B-009 128179314-128222595 processed_transcript
  ENST00000508819 LARP1B-002 128061312-128179410 protein_coding
  ENST00000512292 LARP1B-005 128061286-128123869 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326639ENST00000394288ENST00000432347ENST00000512292
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326639 N/A 0.356±0.00 N/A 2.218±0.00 0.741±0.04 0.611±0.00 0.403±0.00 2.728±1.26 2.847±0.00 N/A N/A 0.759±0.00 0.585±0.25 10.102±0.00
ENST00000394288 4.331±0.00 2.113±0.00 N/A 3.552±0.00 1.876±0.00 2.118±0.00 2.484±0.00 5.707±0.12 4.859±3.03 2.297±1.42 3.141±2.48 3.691±2.39 3.519±1.37 12.913±0.00
ENST00000432347 N/A 0.710±0.00 N/A 0.895±0.00 0.937±0.00 2.696±0.00 N/A N/A N/A 1.190±0.00 N/A 1.312±0.64 N/A N/A
ENST00000512292 N/A N/A 0.553±0.00 N/A 0.954±0.00 1.198±0.54 N/A N/A N/A 0.753±0.05 0.225±0.00 1.199±0.67 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YG CIL_0008YG_0001 VISTA 4:128057618-128659090
CIL_0006YL CIL_0006YL_0002 CGP 4:128061268-128288829

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0019013 IEA viral nucleocapsid
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061169 larp1b La ribonucleoprotein domain family, member 1B protein_coding Danio_rerio
ENSMUSG00000025762 Larp1b La ribonucleoprotein domain family, member 1B protein_coding Mus_musculus

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