C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 60, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139146 FAM60A 9606 - 12:31280584-31327058 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000337682 FAM60A-001 31280584-31326372 protein_coding
  ENST00000448582 FAM60A-003 31280584-31298521 retained_intron
  ENST00000454658 FAM60A-004 31282062-31324162 protein_coding
  ENST00000536836 FAM60A-005 31303495-31326128 processed_transcript
  ENST00000539004 FAM60A-006 31287737-31327058 protein_coding
  ENST00000539409 FAM60A-002 31280584-31326116 protein_coding
  ENST00000542983 FAM60A-007 31282688-31326199 protein_coding
  ENST00000543615 FAM60A-008 31287760-31325494 protein_coding
  ENST00000544921 FAM60A-009 31282639-31298175 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000337682ENST00000448582ENST00000454658ENST00000539004ENST00000539409ENST00000542983ENST00000544921
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000337682 2.016±0.00 2.525±0.00 1.640±0.00 0.409±0.00 3.653±2.41 3.754±1.31 0.301±0.00 0.605±0.00 2.532±0.00 2.653±0.11 N/A 8.051±3.66 2.919±0.49 3.105±1.22
ENST00000448582 N/A 1.731±0.00 2.650±0.00 N/A 2.779±0.00 N/A N/A N/A N/A 1.502±0.00 N/A 3.824±0.00 N/A N/A
ENST00000454658 N/A N/A 2.624±0.00 N/A N/A N/A N/A N/A 1.267±0.00 1.921±0.00 N/A N/A N/A N/A
ENST00000539004 N/A N/A N/A 1.227±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000539409 5.520±0.00 8.693±0.00 N/A 1.169±0.00 3.634±0.00 4.918±0.00 2.441±0.00 5.061±0.00 0.995±0.06 12.169±0.00 0.703±0.48 7.879±3.22 3.597±0.00 3.929±0.00
ENST00000542983 N/A N/A N/A N/A N/A N/A N/A 0.450±0.00 N/A N/A N/A N/A N/A N/A
ENST00000544921 N/A N/A N/A 0.536±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DK CIL_0003DK_0002 CGP 12:31280584-31591097

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0016580 IDA Sin3 complex
GO:0030336 IMP negative regulation of cell migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032653 fam60a family with sequence similarity 60, member A protein_coding Danio_rerio
ENSMUSG00000039985 Fam60a family with sequence similarity 60, member A protein_coding Mus_musculus

Loading