C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: family with sequence similarity 60, member A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000039985 Fam60a 10090 - 6:148921035-148946467 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054080 Fam60a-001 148921035-148946467 protein_coding
  ENSMUST00000081956 Fam60a-002 148921057-148944826 protein_coding
  ENSMUST00000111562 Fam60a-007 148922713-148944812 protein_coding
  ENSMUST00000127063 Fam60a-003 148944390-148946443 processed_transcript
  ENSMUST00000132696 Fam60a-006 148926051-148946155 protein_coding
  ENSMUST00000139355 Fam60a-005 148928580-148946356 protein_coding
  ENSMUST00000143963 Fam60a-008 148932503-148946390 retained_intron
  ENSMUST00000146457 Fam60a-004 148930619-148946415 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054080ENSMUST00000081956ENSMUST00000111562ENSMUST00000132696ENSMUST00000143963
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054080 2.180±1.19 N/A 8.764±1.42 12.165±8.85 0.958±0.48 1.384±0.34 0.652±0.08 1.591±0.55 3.983±3.42 1.803±0.47 0.399±0.15 5.300±4.29 8.718±6.28 1.226±0.64
ENSMUST00000081956 0.560±0.22 2.491±0.29 N/A 0.071±0.00 0.757±0.33 1.021±0.19 N/A 0.624±0.25 0.498±0.31 2.333±0.35 N/A 2.289±0.84 1.838±0.75 0.353±0.07
ENSMUST00000111562 N/A N/A N/A N/A N/A N/A N/A N/A 0.278±0.00 N/A N/A N/A N/A N/A
ENSMUST00000132696 N/A N/A N/A 0.300±0.00 N/A N/A N/A N/A N/A N/A 0.330±0.02 N/A N/A N/A
ENSMUST00000143963 N/A N/A N/A 0.134±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00062C CIL_00062C_0002 CGP 6:148842492-148946467
CIL_0003DK CIL_0003DK_0003 CGP 6:148921035-149101680

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0016580 ISS Sin3 complex
GO:0030336 ISS negative regulation of cell migration

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032653 fam60a family with sequence similarity 60, member A protein_coding Danio_rerio
ENSG00000139146 FAM60A family with sequence similarity 60, member A protein_coding Homo_sapiens

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