C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger CCHC-type and RNA binding motif 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139168 ZCRB1 9606 - 12:42312078-42326118 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000266529 ZCRB1-001 42312078-42326105 protein_coding
  ENST00000548022 ZCRB1-003 42323880-42326094 retained_intron
  ENST00000551102 ZCRB1-004 42325353-42325997 processed_transcript
  ENST00000552235 ZCRB1-002 42313690-42326118 protein_coding
  ENST00000552673 ZCRB1-005 42312931-42326087 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266529ENST00000552235ENST00000552673
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266529 2.309±0.00 2.106±0.00 1.254±0.00 4.478±0.53 2.313±0.06 2.517±0.99 2.109±0.34 3.106±0.89 1.588±0.58 2.083±0.24 2.170±1.03 4.130±1.03 4.352±0.03 6.050±0.00
ENST00000552235 N/A N/A N/A 5.883±0.00 N/A N/A 7.465±0.00 N/A N/A N/A 3.287±0.00 24.350±20.86 73.825±0.00 183.946±0.00
ENST00000552673 4.725±0.00 7.654±0.00 3.177±0.00 10.146±4.36 6.886±3.15 5.301±1.32 12.421±0.00 6.884±2.18 6.448±0.68 7.281±5.37 7.383±0.00 10.640±3.93 7.921±2.65 21.973±2.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DG CIL_0003DG_0002 CGP 12:42312078-42590355

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005689 IDA U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IC RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045691 zcrb1 zinc finger CCHC-type and RNA binding motif 1 protein_coding Danio_rerio
ENSMUSG00000022635 Zcrb1 zinc finger CCHC-type and RNA binding motif 1 protein_coding Mus_musculus

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