C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger CCHC-type and RNA binding motif 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000266529 ZCRB1-001 ENSG00000139168 9606 - 12:42312078-42326105 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000266529
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000266529 2.309±0.00 2.106±0.00 1.254±0.00 4.478±0.53 2.313±0.06 2.517±0.99 2.109±0.34 3.106±0.89 1.588±0.58 2.083±0.24 2.170±1.03 4.130±1.03 4.352±0.03 6.050±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DG CIL_0003DG_0002 CGP 12:42312078-42590355

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005689 IDA U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IC RNA splicing
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000076070 Zcrb1-001 protein_coding Mus_musculus 0 843
ENSMUST00000162160 Zcrb1-002 protein_coding Mus_musculus 0 828
ENSMUST00000159723 Zcrb1-006 retained_intron Mus_musculus 0 544
ENSMUST00000160407 Zcrb1-007 retained_intron Mus_musculus 0 529
ENSMUST00000161955 Zcrb1-005 retained_intron Mus_musculus 0 448
ENSMUST00000161409 Zcrb1-003 nonsense_mediated_decay Mus_musculus 0 388
ENSMUST00000159105 Zcrb1-008 retained_intron Mus_musculus 1.4013e-45 189
ENSMUST00000159719 Zcrb1-004 retained_intron Mus_musculus 8.99998e-41 172

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