C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger CCHC-type and RNA binding motif 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000022635 Zcrb1 10090 - 15:93386097-93398334 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000076070 Zcrb1-001 93386106-93398334 protein_coding
  ENSMUST00000159105 Zcrb1-008 93387617-93388144 retained_intron
  ENSMUST00000159719 Zcrb1-004 93394069-93398273 retained_intron
  ENSMUST00000159723 Zcrb1-006 93386113-93391380 retained_intron
  ENSMUST00000160407 Zcrb1-007 93386110-93391183 retained_intron
  ENSMUST00000161409 Zcrb1-003 93387801-93398334 nonsense_mediated_decay
  ENSMUST00000161955 Zcrb1-005 93387749-93391670 retained_intron
  ENSMUST00000162160 Zcrb1-002 93386097-93398301 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000076070ENSMUST00000159719ENSMUST00000159723ENSMUST00000160407ENSMUST00000161409ENSMUST00000162160
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000076070 6.997±0.53 41.668±8.97 38.812±1.53 35.090±2.80 10.690±5.64 17.611±3.61 13.726±3.99 8.578±2.21 20.533±15.09 17.424±7.68 47.838±1.89 12.074±6.22 35.660±12.50 12.363±2.55
ENSMUST00000159719 1.971±0.93 N/A N/A 4.696±0.00 1.112±0.31 1.318±0.13 0.910±0.00 N/A 1.561±0.83 2.145±0.43 N/A 2.061±2.01 3.435±0.08 N/A
ENSMUST00000159723 N/A N/A 10.926±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.390±0.75 8.922±0.00 N/A
ENSMUST00000160407 N/A N/A N/A 125.471±0.00 N/A N/A N/A N/A N/A N/A N/A 142.984±0.00 164.351±30.85 260.258±0.00
ENSMUST00000161409 16.191±3.39 N/A N/A N/A 8.052±5.62 5.856±2.05 12.214±2.98 13.314±3.66 2.220±0.56 9.731±3.84 N/A 3.852±1.40 N/A 14.938±0.32
ENSMUST00000162160 N/A N/A N/A N/A N/A N/A N/A N/A 1.244±0.00 N/A N/A N/A N/A 3.716±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000468 CIL_000468_0002 CGP 15:93284278-93398334

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005689 ISS U12-type spliceosomal complex
GO:0006397 IEA mRNA processing
GO:0008270 IEA zinc ion binding
GO:0008380 IEA RNA splicing
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000045691 zcrb1 zinc finger CCHC-type and RNA binding motif 1 protein_coding Danio_rerio
ENSG00000139168 ZCRB1 zinc finger CCHC-type and RNA binding motif 1 protein_coding Homo_sapiens

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