C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: POC1 centriolar protein B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139323 POC1B 9606 - 12:89419718-89526024 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313546 POC1B-001 89419718-89526024 protein_coding
  ENST00000393179 POC1B-007 89419718-89525615 protein_coding
  ENST00000539190 POC1B-006 89460710-89525993 retained_intron
  ENST00000546740 POC1B-016 89420787-89461842 processed_transcript
  ENST00000546830 POC1B-009 89492075-89526000 nonsense_mediated_decay
  ENST00000547274 POC1B-010 89485269-89526020 nonsense_mediated_decay
  ENST00000547496 POC1B-002 89421154-89526000 nonsense_mediated_decay
  ENST00000548715 POC1B-011 89425167-89525997 nonsense_mediated_decay
  ENST00000549035 POC1B-005 89420896-89525563 protein_coding
  ENST00000549304 POC1B-014 89459671-89472695 processed_transcript
  ENST00000549504 POC1B-013 89425287-89525205 protein_coding
  ENST00000549591 POC1B-008 89419718-89429460 retained_intron
  ENST00000551819 POC1B-015 89466673-89470405 retained_intron
  ENST00000552563 POC1B-012 89466768-89525415 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000313546ENST00000393179ENST00000546740ENST00000547496ENST00000549035ENST00000549304ENST00000549591ENST00000551819
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000313546 1.285±0.00 N/A 0.815±0.00 2.048±1.15 2.368±1.03 2.243±0.16 0.942±0.50 N/A N/A 2.937±0.00 N/A 3.877±2.61 1.142±0.18 2.683±0.61
ENST00000393179 1.097±0.00 2.385±0.00 N/A 1.585±0.79 N/A N/A 0.545±0.00 2.880±0.00 1.010±0.00 1.922±0.00 0.299±0.00 2.010±0.00 1.001±0.08 1.341±0.00
ENST00000546740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.955±0.00 3.947±0.00 7.388±0.00
ENST00000547496 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.370±0.00 N/A N/A N/A N/A
ENST00000549035 N/A N/A N/A N/A N/A N/A N/A 1.253±0.00 N/A N/A 0.878±0.00 N/A N/A 9.026±0.00
ENST00000549304 N/A N/A N/A 3.434±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549591 N/A 0.590±0.00 N/A N/A N/A N/A 0.178±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000551819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.066±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000213 CIL_000213_0002 CGP 12:89347232-89526024
CIL_0002EZ CIL_0002EZ_0001 CGP 12:89419718-89526262

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000922 IDA spindle pole
GO:0005515 IPI:IEA protein binding
GO:0005813 IDA centrosome
GO:0005814 IDA centriole
GO:0008283 IMP cell proliferation
GO:0036064 IDA ciliary basal body
GO:0042384 IMP cilium assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000021110 poc1b POC1 centriolar protein homolog B (Chlamydomonas) protein_coding Danio_rerio
ENSMUSG00000019952 Poc1b POC1 centriolar protein homolog B (Chlamydomonas) protein_coding Mus_musculus

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