C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: neuro-oncological ventral antigen 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000139910 NOVA1 9606 - 14:26443093-26597754 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000344429 NOVA1-001 26470118-26597440 protein_coding
  ENST00000347476 NOVA1-012 26448718-26595499 protein_coding
  ENST00000449198 NOVA1-007 26448528-26596075 protein_coding
  ENST00000465357 NOVA1-002 26445888-26597486 protein_coding
  ENST00000483536 NOVA1-004 26443093-26597519 nonsense_mediated_decay
  ENST00000539517 NOVA1-003 26445889-26597754 protein_coding
  ENST00000546546 NOVA1-011 26448734-26595473 nonsense_mediated_decay
  ENST00000547415 NOVA1-009 26549351-26595478 retained_intron
  ENST00000547619 NOVA1-010 26471951-26597495 protein_coding
  ENST00000549146 NOVA1-008 26448828-26595626 protein_coding
  ENST00000549571 NOVA1-006 26448852-26597082 protein_coding
  ENST00000551754 NOVA1-005 26519199-26595461 processed_transcript
  ENST00000574031 NOVA1-013 26479017-26597460 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000344429ENST00000449198ENST00000465357ENST00000483536ENST00000539517ENST00000546546ENST00000547415ENST00000547619ENST00000549146ENST00000574031
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000344429 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.106±0.00 N/A 3.499±0.00
ENST00000449198 N/A N/A N/A N/A N/A N/A 0.177±0.00 N/A N/A 0.459±0.00 N/A N/A 0.061±0.00 N/A
ENST00000465357 N/A N/A N/A 3.119±0.00 0.873±0.00 0.608±0.00 N/A 0.183±0.00 0.055±0.00 N/A N/A 0.331±0.01 N/A 3.255±0.00
ENST00000483536 2.221±0.00 N/A N/A 1.089±0.00 0.622±0.00 1.151±0.00 0.067±0.00 N/A 0.014±0.00 0.083±0.00 N/A 0.128±0.10 0.011±0.00 N/A
ENST00000539517 6.561±0.00 1.269±0.00 0.324±0.00 4.170±1.84 2.539±2.09 3.325±0.00 0.294±0.23 1.786±0.00 1.012±0.00 0.359±0.15 0.585±0.00 0.656±0.45 0.036±0.02 3.518±1.50
ENST00000546546 N/A N/A N/A N/A 4.491±0.00 N/A N/A N/A N/A 0.909±0.00 N/A N/A N/A N/A
ENST00000547415 N/A N/A 1.647±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547619 N/A N/A N/A N/A 2.077±0.00 N/A 0.231±0.00 N/A N/A N/A N/A 0.421±0.00 N/A N/A
ENST00000549146 N/A 4.010±0.00 N/A N/A N/A N/A N/A N/A 0.146±0.00 N/A 2.239±0.00 N/A N/A N/A
ENST00000574031 N/A N/A N/A N/A N/A N/A N/A 0.075±0.00 N/A 0.124±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EO CIL_0005EO_0001 CGP 14:24809656-26597754

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006396 TAS RNA processing
GO:0007268 TAS synaptic transmission
GO:0007626 TAS locomotory behavior
GO:0008380 TAS RNA splicing
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0051252 IEA regulation of RNA metabolic process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017673 nova2 neuro-oncological ventral antigen 2 protein_coding Danio_rerio
ENSDARG00000020178 nova1 neuro-oncological ventral antigen 1 protein_coding Danio_rerio
ENSMUSG00000021047 Nova1 neuro-oncological ventral antigen 1 protein_coding Mus_musculus

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