C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neuro-oncological ventral antigen 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000539517 NOVA1-003 ENSG00000139910 9606 - 14:26445889-26597754 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000539517
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000539517 6.561±0.00 1.269±0.00 0.324±0.00 4.170±1.84 2.539±2.09 3.325±0.00 0.294±0.23 1.786±0.00 1.012±0.00 0.359±0.15 0.585±0.00 0.656±0.45 0.036±0.02 3.518±1.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EO CIL_0005EO_0001 CGP 14:24809656-26597754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS:IEA RNA binding
GO:0003729 IEA mRNA binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006396 TAS RNA processing
GO:0007268 TAS synaptic transmission
GO:0007626 TAS locomotory behavior
GO:0008380 TAS RNA splicing
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0044822 IDA poly(A) RNA binding
GO:0051252 IEA regulation of RNA metabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021438 Nova1-201 protein_coding Mus_musculus 0 6143
ENSMUST00000032571 Nova2-201 protein_coding Mus_musculus 2e-29 135
ENSMUST00000172835 Nova2-001 protein_coding Mus_musculus 2e-29 135

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