C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription factor 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140262 TCF12 9606 + 15:56918623-57299281 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000267811 TCF12-001 56918625-57289853 protein_coding
  ENST00000333725 TCF12-002 56918694-57288508 protein_coding
  ENST00000343827 TCF12-008 57219466-57288506 protein_coding
  ENST00000438423 TCF12-025 56918623-57288514 protein_coding
  ENST00000537840 TCF12-006 57219435-57286257 protein_coding
  ENST00000543579 TCF12-004 57219430-57286251 protein_coding
  ENST00000557843 TCF12-026 56918832-57288085 protein_coding
  ENST00000557947 TCF12-027 56919148-57192239 protein_coding
  ENST00000558210 TCF12-022 57251169-57262198 processed_transcript
  ENST00000558908 TCF12-023 56918675-57091829 processed_transcript
  ENST00000559216 TCF12-013 57118350-57192293 processed_transcript
  ENST00000559609 TCF12-003 56918675-57282476 protein_coding
  ENST00000559703 TCF12-010 57248041-57286644 protein_coding
  ENST00000559710 TCF12-009 57248016-57286458 protein_coding
  ENST00000560190 TCF12-024 56918675-57286550 processed_transcript
  ENST00000560191 TCF12-030 57282183-57286945 processed_transcript
  ENST00000560506 TCF12-020 57248016-57263224 processed_transcript
  ENST00000560764 TCF12-018 57219037-57253468 processed_transcript
  ENST00000560836 TCF12-032 57282443-57299281 protein_coding
  ENST00000560887 TCF12-014 57134316-57231252 processed_transcript
  ENST00000560948 TCF12-031 57282455-57291124 protein_coding
  ENST00000561152 TCF12-028 56919517-57166428 nonsense_mediated_decay
  ENST00000561235 TCF12-017 57214079-57243515 processed_transcript
  ENST00000561346 TCF12-016 57109258-57243553 processed_transcript
  ENST00000561420 TCF12-021 57248042-57273198 processed_transcript
  ENST00000561449 TCF12-011 57252199-57273164 processed_transcript
  ENST00000561454 TCF12-029 57281647-57286420 processed_transcript
  ENST00000569880 TCF12-033 57063748-57092023 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000267811ENST00000333725ENST00000343827ENST00000557843ENST00000560190ENST00000561346ENST00000561420ENST00000561449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000267811 2.701±0.00 1.354±0.00 N/A 1.315±0.08 1.780±0.00 N/A 0.727±0.00 N/A 1.297±0.90 1.681±0.00 0.571±0.00 3.123±0.91 1.209±0.00 1.925±0.00
ENST00000333725 2.030±0.00 N/A 1.260±0.00 1.715±0.00 2.109±0.00 4.232±0.57 1.322±0.16 4.599±0.00 1.262±0.00 4.105±0.00 2.514±0.00 4.134±1.83 2.282±1.14 6.715±2.12
ENST00000343827 2.365±0.00 2.886±0.00 N/A 2.336±0.03 2.493±0.84 5.401±0.00 1.284±0.24 2.733±0.68 1.386±0.00 2.808±0.96 1.493±0.00 3.658±1.27 2.163±0.09 4.286±0.00
ENST00000557843 3.195±0.00 N/A 2.005±0.00 2.241±0.00 1.666±0.27 N/A 2.706±0.00 1.698±0.00 4.734±0.00 4.355±0.19 1.274±0.88 4.215±1.99 1.702±0.09 N/A
ENST00000560190 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.649±0.00 N/A N/A N/A
ENST00000561346 N/A N/A N/A N/A N/A N/A N/A 7.889±0.00 N/A N/A N/A N/A N/A N/A
ENST00000561420 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.606±0.00
ENST00000561449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.412±0.00 14.470±0.00 20.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VA CIL_0008VA_0001 VISTA 15:56833046-57433760
CIL_0007TG CIL_0007TG_0001 VISTA 15:56833830-57434754

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006955 TAS immune response
GO:0007517 TAS muscle organ development
GO:0008134 IPI transcription factor binding
GO:0010628 IEA positive regulation of gene expression
GO:0035326 IC enhancer binding
GO:0043425 IPI bHLH transcription factor binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046332 IPI SMAD binding
GO:0046982 IEA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0070888 IEA E-box binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004714 tcf12 transcription factor 12 protein_coding Danio_rerio
ENSMUSG00000032228 Tcf12 transcription factor 12 protein_coding Mus_musculus

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