C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000438423 TCF12-025 ENSG00000140262 9606 + 15:56918623-57288514 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VA CIL_0008VA_0001 VISTA 15:56833046-57433760
CIL_0007TG CIL_0007TG_0001 VISTA 15:56833830-57434754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006955 TAS immune response
GO:0007517 TAS muscle organ development
GO:0008134 IPI transcription factor binding
GO:0010628 IEA positive regulation of gene expression
GO:0035326 IC enhancer binding
GO:0043425 IPI bHLH transcription factor binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0045666 IEA positive regulation of neuron differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046332 IPI SMAD binding
GO:0046982 IEA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0070888 IEA E-box binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000183404 Tcf12-001 protein_coding Mus_musculus 0 5507
ENSMUST00000183918 Tcf12-010 protein_coding Mus_musculus 0 4588
ENSMUST00000184783 Tcf12-019 protein_coding Mus_musculus 0 4316
ENSMUST00000184770 Tcf12-009 retained_intron Mus_musculus 0 3546
ENSMUST00000034755 Tcf12-006 protein_coding Mus_musculus 0 3544
ENSMUST00000184867 Tcf12-007 nonsense_mediated_decay Mus_musculus 0 3539
ENSMUST00000185117 Tcf12-018 protein_coding Mus_musculus 0 2830
ENSMUST00000184523 Tcf12-005 protein_coding Mus_musculus 0 2745
ENSMUST00000183992 Tcf12-003 protein_coding Mus_musculus 0 1711
ENSMUST00000184072 Tcf12-021 protein_coding Mus_musculus 0 1099
ENSMUST00000184448 Tcf12-011 protein_coding Mus_musculus 0 972
ENSMUST00000183784 Tcf12-014 processed_transcript Mus_musculus 0 946
ENSMUST00000184416 Tcf12-017 nonsense_mediated_decay Mus_musculus 0 891
ENSMUST00000184378 Tcf12-013 nonsense_mediated_decay Mus_musculus 0 809
ENSMUST00000183647 Tcf12-016 nonsense_mediated_decay Mus_musculus 0 789
ENSMUST00000184196 Tcf12-002 retained_intron Mus_musculus 0 712
ENSMUST00000184107 Tcf12-015 nonsense_mediated_decay Mus_musculus 0 695
ENSMUST00000183594 Tcf12-020 nonsense_mediated_decay Mus_musculus 0 580
ENSDART00000009938 tcf12-002 protein_coding Danio_rerio 0 418
ENSMUST00000183492 Tcf12-008 protein_coding Mus_musculus 0 387
ENSMUST00000184029 Tcf12-012 protein_coding Mus_musculus 0 281

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