C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transcription factor 12
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032228 Tcf12 10090 - 9:71842688-72111871 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000034755 Tcf12-006 71844268-72111821 protein_coding
  ENSMUST00000183404 Tcf12-001 71842688-72111847 protein_coding
  ENSMUST00000183492 Tcf12-008 71883743-72111772 protein_coding
  ENSMUST00000183594 Tcf12-020 71885215-72111792 nonsense_mediated_decay
  ENSMUST00000183647 Tcf12-016 71883122-72000474 nonsense_mediated_decay
  ENSMUST00000183784 Tcf12-014 71868224-71884711 processed_transcript
  ENSMUST00000183918 Tcf12-010 71844273-71896396 protein_coding
  ENSMUST00000183992 Tcf12-003 71858587-72111202 protein_coding
  ENSMUST00000184029 Tcf12-012 71884437-71922710 protein_coding
  ENSMUST00000184072 Tcf12-021 71875989-72109724 protein_coding
  ENSMUST00000184107 Tcf12-015 71883764-72111600 nonsense_mediated_decay
  ENSMUST00000184196 Tcf12-002 71942445-72111847 retained_intron
  ENSMUST00000184378 Tcf12-013 71875989-71895985 nonsense_mediated_decay
  ENSMUST00000184416 Tcf12-017 71882732-72000476 nonsense_mediated_decay
  ENSMUST00000184448 Tcf12-011 71849891-71896089 protein_coding
  ENSMUST00000184523 Tcf12-005 71849894-72111812 protein_coding
  ENSMUST00000184770 Tcf12-009 71844252-71896086 retained_intron
  ENSMUST00000184783 Tcf12-019 71845512-72111871 protein_coding
  ENSMUST00000184806 Tcf12-004 72106139-72110481 retained_intron
  ENSMUST00000184867 Tcf12-007 71844277-72111807 nonsense_mediated_decay
  ENSMUST00000185117 Tcf12-018 71844723-72111651 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000034755ENSMUST00000183404ENSMUST00000183594ENSMUST00000183784ENSMUST00000183918ENSMUST00000183992ENSMUST00000184072ENSMUST00000184378ENSMUST00000184448ENSMUST00000184523ENSMUST00000184770ENSMUST00000184867ENSMUST00000185117
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000034755 9.819±4.70 6.494±0.93 14.455±1.12 17.905±0.73 13.659±1.80 8.218±0.40 2.772±0.77 5.475±1.72 4.828±2.66 14.573±5.13 2.296±0.37 14.358±4.01 7.482±3.04 1.365±0.00
ENSMUST00000183404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.527±0.03 N/A N/A N/A
ENSMUST00000183594 N/A 12.787±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.425±0.00 22.998±0.00 N/A
ENSMUST00000183784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 44.576±0.00 N/A N/A
ENSMUST00000183918 N/A N/A 5.165±0.00 7.892±0.00 6.666±0.00 N/A N/A N/A N/A N/A N/A 7.005±1.08 N/A N/A
ENSMUST00000183992 9.784±0.62 N/A N/A N/A 15.451±10.34 N/A 5.225±0.00 6.246±0.00 N/A N/A N/A 12.721±2.60 N/A 2.119±0.42
ENSMUST00000184072 N/A 12.417±1.41 N/A N/A N/A N/A N/A N/A 4.664±0.99 N/A N/A N/A N/A 3.927±0.00
ENSMUST00000184378 N/A 23.388±4.80 N/A N/A 38.878±9.76 23.440±3.10 N/A 21.073±3.56 4.796±0.62 N/A N/A 29.655±3.11 N/A N/A
ENSMUST00000184448 N/A N/A N/A N/A 11.040±1.07 N/A N/A N/A N/A 12.661±0.92 N/A N/A N/A 0.954±0.00
ENSMUST00000184523 8.527±0.83 N/A N/A N/A 7.735±0.00 N/A 3.372±0.00 3.625±0.00 N/A N/A N/A 10.852±1.89 N/A 1.562±0.00
ENSMUST00000184770 N/A N/A N/A 5.009±0.94 N/A N/A N/A N/A 1.206±0.00 N/A N/A 5.458±0.00 N/A 0.995±0.24
ENSMUST00000184867 N/A 5.664±1.22 N/A 1.419±0.00 5.094±1.07 N/A N/A 3.134±0.00 1.508±0.41 N/A N/A 2.507±0.00 1.963±0.03 N/A
ENSMUST00000185117 7.983±1.31 N/A 6.623±0.83 2.965±0.00 8.394±0.71 2.611±0.00 3.512±0.49 4.467±0.80 2.666±1.00 10.499±0.74 2.121±0.52 14.610±7.30 8.807±2.84 2.093±0.87

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004OZ CIL_0004OZ_0002 CGP 9:71626509-72111871
CIL_0007TG CIL_0007TG_0002 VISTA 9:71674986-72275900
CIL_0008VA CIL_0008VA_0002 VISTA 9:71675967-72276730
CIL_0004OY CIL_0004OY_0002 CGP 9:71842688-72363777

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000790 IEA nuclear chromatin
GO:0003677 IDA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0008134 IEA transcription factor binding
GO:0010628 IMP positive regulation of gene expression
GO:0043425 IEA bHLH transcription factor binding
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046332 IEA SMAD binding
GO:0046982 IDA protein heterodimerization activity
GO:0046983 IEA protein dimerization activity
GO:0070888 IDA E-box binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000004714 tcf12 transcription factor 12 protein_coding Danio_rerio
ENSG00000140262 TCF12 transcription factor 12 protein_coding Homo_sapiens

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