C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000557843 TCF12-026 ENSG00000140262 9606 + 15:56918832-57288085 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaENST00000557843
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000557843 3.195±0.00 2.005±0.00 2.241±0.00 1.666±0.27 2.706±0.00 1.698±0.00 4.734±0.00 4.355±0.19 1.274±0.88 4.215±1.99 1.702±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VA CIL_0008VA_0001 VISTA 15:56833046-57433760
CIL_0007TG CIL_0007TG_0001 VISTA 15:56833830-57434754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006955 TAS immune response
GO:0007517 TAS muscle organ development
GO:0008134 IPI transcription factor binding
GO:0035326 IC enhancer binding
GO:0043425 IPI bHLH transcription factor binding
GO:0044212 IDA transcription regulatory region DNA binding
GO:0046332 IPI SMAD binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000185117 Tcf12-018 protein_coding Mus_musculus 0 4625
ENSMUST00000034755 Tcf12-006 protein_coding Mus_musculus 0 4617
ENSMUST00000184867 Tcf12-007 nonsense_mediated_decay Mus_musculus 0 3775
ENSMUST00000183918 Tcf12-010 protein_coding Mus_musculus 0 2863
ENSMUST00000184770 Tcf12-009 retained_intron Mus_musculus 0 2863
ENSMUST00000183404 Tcf12-001 protein_coding Mus_musculus 0 2863
ENSMUST00000184783 Tcf12-019 protein_coding Mus_musculus 0 2270
ENSMUST00000183992 Tcf12-003 protein_coding Mus_musculus 0 2161
ENSMUST00000184448 Tcf12-011 protein_coding Mus_musculus 0 1884
ENSMUST00000184523 Tcf12-005 protein_coding Mus_musculus 0 1578
ENSMUST00000184072 Tcf12-021 protein_coding Mus_musculus 0 1099
ENSMUST00000184416 Tcf12-017 nonsense_mediated_decay Mus_musculus 0 891
ENSMUST00000184378 Tcf12-013 nonsense_mediated_decay Mus_musculus 0 809
ENSMUST00000183647 Tcf12-016 nonsense_mediated_decay Mus_musculus 0 789
ENSMUST00000183784 Tcf12-014 processed_transcript Mus_musculus 0 743
ENSMUST00000184107 Tcf12-015 nonsense_mediated_decay Mus_musculus 0 695
ENSMUST00000184196 Tcf12-002 retained_intron Mus_musculus 0 634
ENSMUST00000183594 Tcf12-020 nonsense_mediated_decay Mus_musculus 0 580
ENSMUST00000183492 Tcf12-008 protein_coding Mus_musculus 0 377
ENSMUST00000184029 Tcf12-012 protein_coding Mus_musculus 0 281

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