C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger and SCAN domain containing 29
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140265 ZSCAN29 9606 - 15:43358172-43371025 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000396972 ZSCAN29-201 43361018-43370062 protein_coding
  ENST00000396976 ZSCAN29-001 43358172-43370048 protein_coding
  ENST00000561661 ZSCAN29-006 43369851-43371025 protein_coding
  ENST00000562072 ZSCAN29-003 43361073-43369910 protein_coding
  ENST00000563508 ZSCAN29-007 43369998-43370907 processed_transcript
  ENST00000566849 ZSCAN29-002 43361018-43370062 nonsense_mediated_decay
  ENST00000568898 ZSCAN29-005 43361073-43369910 protein_coding
  ENST00000570181 ZSCAN29-004 43363749-43369676 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396976ENST00000566849
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396976 3.156±0.00 2.722±0.00 4.254±0.00 1.911±0.00 2.547±0.37 3.046±0.00 3.862±0.00 1.124±0.00 1.484±0.00 3.155±0.00 5.398±2.33 2.874±1.82 10.663±4.77
ENST00000566849 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 27.157±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YG CIL_0005YG_0001 CGP 15:43330674-43371025
CIL_0005YH CIL_0005YH_0001 CGP 15:43358172-43409771

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IBA:IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000094859 si:dkey-11o15.10 si:dkey-11o15.10 protein_coding Danio_rerio
ENSDARG00000097059 si:dkey-159n16.4 si:dkey-159n16.4 protein_coding Danio_rerio
ENSDARG00000097776 protein_coding Danio_rerio
ENSMUSG00000050619 Zscan29 zinc finger SCAN domains 29 protein_coding Mus_musculus

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