C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger and SCAN domain containing 29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396976 ZSCAN29-001 ENSG00000140265 9606 - 15:43358172-43370048 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000396976
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000396976 3.156±0.00 2.722±0.00 4.254±0.00 1.911±0.00 2.547±0.37 3.046±0.00 3.862±0.00 1.124±0.00 1.484±0.00 3.155±0.00 5.398±2.33 2.874±1.82 10.663±4.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YG CIL_0005YG_0001 CGP 15:43330674-43371025
CIL_0005YH CIL_0005YH_0001 CGP 15:43358172-43409771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IBA:IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110661 Zscan29-001 protein_coding Mus_musculus 0 2667
ENSMUST00000079024 Zscan29-004 protein_coding Mus_musculus 0 1642
ENSMUST00000163766 Zscan29-201 protein_coding Mus_musculus 0 1336
ENSMUST00000146243 Zscan29-002 protein_coding Mus_musculus 0 584
ENSMUST00000156370 Zscan29-003 retained_intron Mus_musculus 0 549
ENSMUST00000180016 Zfp62-202 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000061757 Zfp62-201 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000136539 Zfp62-010 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000109197 Zfp62-008 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000109198 Zfp62-001 protein_coding Mus_musculus 0.00000005 66
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00003 57
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0001 55

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