C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger SCAN domains 29
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000050619 Zscan29 10090 - 2:121158273-121171125 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079024 Zscan29-004 121160681-121170268 protein_coding
  ENSMUST00000110661 Zscan29-001 121158273-121170268 protein_coding
  ENSMUST00000146243 Zscan29-002 121165141-121171125 protein_coding
  ENSMUST00000156370 Zscan29-003 121161482-121164434 retained_intron
  ENSMUST00000163766 Zscan29-201 121160696-121171125 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastHeartKidneyLiverLungMuscleOvaryENSMUST00000110661ENSMUST00000146243
Transcript ID Adrenal Bladder Breast Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000110661 N/A 3.997±0.00 4.753±1.18 1.636±0.00 3.387±0.57 2.125±0.00 3.299±0.00 1.414±0.27 7.190±0.52
ENSMUST00000146243 6.550±0.13 N/A N/A N/A 3.724±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005YG CIL_0005YG_0002 CGP 2:121140428-121171125
CIL_0005YH CIL_0005YH_0002 CGP 2:121158273-121198770

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000981 IBA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003676 IEA nucleic acid binding
GO:0005634 IBA nucleus
GO:0006357 IBA regulation of transcription from RNA polymerase II promoter
GO:0006366 IBA transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000094859 si:dkey-11o15.10 si:dkey-11o15.10 protein_coding Danio_rerio
ENSDARG00000097059 si:dkey-159n16.4 si:dkey-159n16.4 protein_coding Danio_rerio
ENSDARG00000097776 protein_coding Danio_rerio
ENSG00000140265 ZSCAN29 zinc finger and SCAN domain containing 29 protein_coding Homo_sapiens

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