C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: codanin 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000140326 CDAN1 9606 - 15:42723559-42737126 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000356231 CDAN1-001 42723562-42737126 protein_coding
  ENST00000562465 CDAN1-002 42723559-42730764 nonsense_mediated_decay
  ENST00000563260 CDAN1-005 42736562-42737054 protein_coding
  ENST00000563604 CDAN1-004 42723562-42725637 retained_intron
  ENST00000565930 CDAN1-003 42724895-42725539 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000356231ENST00000562465ENST00000563604ENST00000565930
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000356231 1.223±0.00 0.795±0.00 0.112±0.00 0.495±0.00 0.817±0.71 1.051±0.00 0.540±0.00 1.590±0.00 0.549±0.00 0.917±0.00 N/A 2.750±0.64 1.698±0.61 2.262±0.27
ENST00000562465 0.796±0.00 0.979±0.00 N/A 0.415±0.00 N/A 0.788±0.00 N/A 1.297±0.00 0.779±0.00 N/A 0.521±0.00 1.749±0.00 N/A 1.666±0.00
ENST00000563604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.164±0.00 N/A N/A N/A
ENST00000565930 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.913±0.00 N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005PG CIL_0005PG_0001 CGP 15:42575659-42737126
CIL_0005YE CIL_0005YE_0001 CGP 15:42723559-42920809

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006325 IMP chromatin organization
GO:0008104 IMP protein localization
GO:0008156 IMP negative regulation of DNA replication
GO:0012505 IDA endomembrane system
GO:0016021 IEA integral component of membrane
GO:0031497 IMP chromatin assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000042261 cdan1 congenital dyserythropoietic anemia, type I protein_coding Danio_rerio
ENSMUSG00000027284 Cdan1 congenital dyserythropoietic anemia, type I (human) protein_coding Mus_musculus

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